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MG592583.1__AUR95829.1__NVP1213O_53__00053

Bact-Vir

MG592583.1__AUR95829.1__NVP1213O_53__00053

Identity

Accession:
MG592583 ↗
Kingdom:
phage

Quality

80.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-37
PDB
Domain cluster: representative
CATH (62)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hbkA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.80 56.0 3.38e-01 75.0% 22.5%
2r6iA01 3.30.2180.10 Alpha Beta › 2-Layer Sandwich › ATP12-like › ATP12-like 0.80 68.0 5.03e-01 100.0% 43.8%
3iv4A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.79 67.0 4.75e-01 100.0% 77.7%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.76 61.0 5.46e-01 100.0% 64.9%
1ncsA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.76 60.0 5.63e-01 100.0% 72.3%
5h9kA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.75 52.0 3.40e-01 72.2% 22.7%
3khyA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.75 61.0 3.92e-01 100.0% 59.3%
3mixA01 3.40.30.60 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 0.74 59.0 4.28e-01 100.0% 70.0%
4s39A02 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.73 56.0 4.17e-01 100.0% 35.3%
2diyA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.73 60.0 4.37e-01 100.0% 76.6%
1e2tA02 3.30.1120.150 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.72 55.0 4.19e-01 86.1% 43.0%
2mtzA02 2.40.440.10 Mainly Beta › Beta Barrel › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like 0.72 60.0 4.24e-01 100.0% 81.5%
7febA01 3.40.30.60 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 0.72 59.0 4.12e-01 100.0% 96.2%
2h3gX01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.70 60.0 4.57e-01 100.0% 63.6%
4paaA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.70 51.0 3.09e-01 97.2% 11.8%
2cofA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.70 52.0 4.04e-01 100.0% 41.1%
6g62A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.70 54.0 4.03e-01 100.0% 73.0%
2p1jA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.70 56.0 3.85e-01 94.4% 58.7%
2x49A01 3.40.30.60 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 0.69 58.0 4.36e-01 100.0% 83.3%
4cswA02 3.40.366.30 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 0.69 55.0 3.62e-01 100.0% 22.2%
2wm1A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.68 56.0 3.29e-01 100.0% 16.3%
3kihC01 2.20.25.510 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.67 46.0 4.69e-01 77.8% 76.5%
8gtyA02 3.30.420.150 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 0.67 54.0 3.56e-01 97.2% 34.1%
5k19A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.66 57.0 3.25e-01 100.0% 17.0%
3kbgA02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.65 48.0 4.48e-01 100.0% 62.3%
4m85C00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.64 48.0 3.13e-01 86.1% 73.8%
4hb9A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 52.0 2.98e-01 97.2% 49.9%
1wgqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 46.0 3.62e-01 100.0% 41.3%
2jozA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 48.0 3.65e-01 88.9% 69.8%
2dhjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 47.0 3.50e-01 100.0% 36.8%
3d5lB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 49.0 3.77e-01 100.0% 36.3%
3fogA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.62 48.0 3.72e-01 100.0% 76.5%
3au4A04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 49.0 3.83e-01 97.2% 55.9%
4nswA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 48.0 3.65e-01 100.0% 34.9%
7oode01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.62 48.0 4.11e-01 97.2% 95.6%
3d6wB02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.62 46.0 4.56e-01 88.9% 92.3%
1dhkB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 49.0 3.18e-01 100.0% 25.1%
3eo5A01 2.20.230.10 Mainly Beta › Single Sheet › Resuscitation-promoting factor rpfb fold › Resuscitation-promoting factor rpfb. 0.60 43.0 3.36e-01 72.2% 67.0%
2codA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 43.0 3.56e-01 100.0% 42.7%
3f0zA01 3.30.310.260 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.60 45.0 3.45e-01 100.0% 69.6%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.59 42.0 3.14e-01 88.9% 26.5%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 46.0 3.52e-01 100.0% 35.0%
4n06A01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.59 46.0 3.70e-01 94.4% 43.9%
4lgqA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 44.0 2.98e-01 80.6% 36.1%
4gzuB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 46.0 3.65e-01 100.0% 40.7%
3orqA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.59 41.0 2.82e-01 100.0% 70.6%
2kpiA01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.58 44.0 4.33e-01 91.7% 82.1%
1sjwA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 42.0 2.83e-01 80.6% 34.5%
2oqbA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 41.0 3.12e-01 86.1% 34.3%
2cocA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 42.0 3.38e-01 100.0% 41.0%
4jqtA01 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.57 46.0 2.96e-01 97.2% 17.4%
3by7E00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 43.0 3.64e-01 100.0% 92.1%
2jrbA00 3.30.250.20 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › L1 transposable element, C-terminal domain 0.54 41.0 3.65e-01 97.2% 60.0%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.54 38.0 3.00e-01 88.9% 31.4%
2onfA01 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.53 43.0 3.04e-01 100.0% 87.3%
1tk7A01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.53 41.0 4.08e-01 88.9% 91.9%
6wngA02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.51 43.0 2.62e-01 100.0% 81.2%
1jyoA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.51 41.0 2.95e-01 100.0% 57.7%
1mkeA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 39.0 2.71e-01 100.0% 22.9%
3grdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 40.0 2.93e-01 100.0% 51.5%
1x31C02 3.30.70.1520 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Heterotetrameric sarcosine oxidase 0.51 37.0 3.11e-01 77.8% 85.0%
2d5wA03 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.51 36.0 2.25e-01 80.6% 31.9%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4999513 244.2.1.11 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › DUF2283 0.89 61.0 5.39e-01 72.2% 52.0%
4517280 2.8.1.2 beta barrels › OB-fold › mu transposases-C › mu transposases-C › Mu-transpos_C_2 0.88 61.0 4.77e-01 72.2% 37.1%
4019353 243.6.1.4 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA 0.82 56.0 4.18e-01 72.2% 28.9%
4043193 2484.1.1.37 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.80 66.0 4.77e-01 100.0% 41.8%
4474081 2485.1.1.6 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › FHIPEP 0.79 66.0 4.92e-01 100.0% 82.0%
4675036 2485.1.1.6 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › FHIPEP 0.78 63.0 4.74e-01 100.0% 82.0%
3801175 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.78 69.0 4.95e-01 100.0% 39.0%
4612008 2485.1.1.6 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › FHIPEP 0.78 63.0 4.66e-01 100.0% 81.0%
4674401 2484.1.1.37 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.77 64.0 4.65e-01 97.2% 40.0%
4335502 2.8.1.2 beta barrels › OB-fold › mu transposases-C › mu transposases-C › Mu-transpos_C_2 0.75 56.0 4.12e-01 80.6% 32.2%
3597025 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.74 54.0 3.87e-01 77.8% 40.0%
4122662 65.1.1.0 beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.74 60.0 5.46e-01 94.4% 90.0%
4583884 296.1.1.3 a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › PF26540 0.73 56.0 4.08e-01 100.0% 32.8%
3989835 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.73 61.0 4.29e-01 97.2% 63.3%
4341865 4325.1.1.1 mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.72 57.0 5.19e-01 100.0% 72.7%
7390 219.1.1.6 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 0.72 55.0 3.25e-01 86.1% 13.5%
3945385 219.1.1.6 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 0.72 55.0 3.49e-01 86.1% 21.1%
3235525 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.72 61.0 3.84e-01 100.0% 18.0%
3239541 327.11.2.3 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_6 0.70 51.0 3.51e-01 80.6% 23.2%
4338013 2002.1.1.274 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_1, Amidohydro_3 0.70 57.0 3.29e-01 97.2% 11.7%
1178357 327.11.2.3 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_6 0.68 49.0 4.53e-01 80.6% 58.0%
3212072 2002.1.1.134 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_2 0.68 58.0 3.33e-01 100.0% 14.8%
3617706 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 55.0 4.04e-01 94.4% 63.0%
4466963 2485.1.1.16 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › ArsC 0.67 56.0 3.89e-01 97.2% 100.0%
3211870 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 55.0 4.00e-01 97.2% 60.9%
5060223 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.66 52.0 3.26e-01 91.7% 16.8%
3887028 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.66 55.0 3.24e-01 100.0% 18.2%
3939983 327.11.2.3 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_6 0.66 51.0 3.61e-01 91.7% 28.0%
3997581 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.65 55.0 3.16e-01 100.0% 20.0%
4150972 2484.1.1.11 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ribosomal_L18p 0.65 50.0 4.03e-01 100.0% 60.0%
3441357 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 54.0 3.29e-01 97.2% 46.9%
3720028 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 49.0 3.51e-01 86.1% 68.7%
3474420 220.1.1.123 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st 0.65 51.0 3.53e-01 100.0% 27.3%
3479095 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 52.0 3.75e-01 97.2% 48.7%
4484289 633.23.1.9 alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 0.64 51.0 3.23e-01 88.9% 16.8%
4202176 220.1.1.123 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st 0.64 50.0 3.33e-01 100.0% 21.6%
4935756 242.2.1.0 a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like 0.64 52.0 4.64e-01 97.2% 63.6%
3939443 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.62 46.0 3.56e-01 100.0% 49.1%
5079418 5050.1.1.10 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_2 0.62 50.0 3.19e-01 100.0% 20.0%
4679015 220.1.1.150 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF986 0.61 47.0 3.90e-01 97.2% 52.5%
4034336 4.8.1.13 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › ComK 0.61 47.0 3.34e-01 100.0% 26.2%
3399340 394.1.1.1 few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.61 46.0 4.05e-01 77.8% 72.4%
3305644 5.3.1.2 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin 0.61 47.0 3.44e-01 100.0% 36.3%
3247329 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 45.0 3.53e-01 100.0% 37.3%
3212869 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.60 44.0 2.76e-01 83.3% 23.4%
5008331 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.60 44.0 2.76e-01 83.3% 23.4%
3236050 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.59 42.0 3.34e-01 100.0% 47.3%
3906424 220.1.1.49 beta barrels › PH domain-like › PH domain-like › PH domain-like › Carm_PH 0.59 46.0 3.22e-01 97.2% 29.3%
5016434 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 47.0 3.89e-01 100.0% 65.3%
4444512 394.1.1.2 few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_19 0.57 39.0 3.80e-01 77.8% 91.1%
3035660 3794.1.1.1 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › PCC_BT 0.56 39.0 2.80e-01 80.6% 27.4%
3513513 220.1.1.67 beta barrels › PH domain-like › PH domain-like › PH domain-like › EVH1_PP4R3 0.55 44.0 3.26e-01 97.2% 38.2%