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MG592584.1__AUR95861.1__NVP1214O_12__00012

Bact-Vir

MG592584.1__AUR95861.1__NVP1214O_12__00012

Identity

Accession:
MG592584 ↗
Kingdom:
phage

Quality

95.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_1.214.O._10N.222.54.F11

TaxID: 1881264

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-58
PDB
Domain cluster: rep: OK040790.1__UDL16018.1__SEA_PUMPERNICKEL_268__00227__D2-58
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6vtmB00 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.83 55.0 4.48e-01 100.0% 40.6%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.72 55.0 5.24e-01 100.0% 71.2%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 52.0 5.01e-01 98.2% 71.2%
7c2fB01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.67 39.0 3.41e-01 100.0% 37.2%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 49.0 5.28e-01 94.7% 91.8%
7p0eA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 45.0 3.74e-01 100.0% 43.4%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 53.0 4.83e-01 100.0% 87.5%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 53.0 4.76e-01 100.0% 67.5%
1a1rA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 44.0 3.93e-01 98.2% 52.9%
6rptC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 46.0 3.63e-01 100.0% 41.1%
3zpeA00 2.60.90.50 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.61 48.0 3.55e-01 100.0% 34.8%
1mrzB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.59 45.0 3.63e-01 100.0% 42.0%
2dlgA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 41.0 3.74e-01 100.0% 53.8%
3b8fB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.58 48.0 3.54e-01 100.0% 35.9%
2m6pA00 2.20.28.270 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase-binding protein A 0.57 38.0 4.13e-01 96.5% 87.0%
1bnkA00 3.10.300.10 Alpha Beta › Roll › 3-methyladenine DNA Glycosylase; Chain A › Methylpurine-DNA glycosylase (MPG) 0.57 49.0 3.44e-01 100.0% 67.0%
2fg9A01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 44.0 3.25e-01 100.0% 31.4%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.56 48.0 4.22e-01 100.0% 73.3%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 40.0 3.98e-01 94.7% 78.0%
3vgfA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 37.0 3.34e-01 100.0% 49.4%
3bh1A03 3.40.140.40 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Domain of unknown function (DUF1846), C-terminal subdomain 0.54 48.0 3.55e-01 100.0% 72.6%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 39.0 3.69e-01 98.2% 64.4%
4ewfA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.54 41.0 2.75e-01 87.7% 94.0%
5ixgA00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.53 47.0 3.38e-01 100.0% 89.3%
2x32A00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.53 47.0 3.34e-01 100.0% 89.1%
2d5mA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 44.0 3.09e-01 100.0% 29.5%
1zvfB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 36.0 2.62e-01 71.9% 67.7%
2budA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 41.0 3.67e-01 98.2% 59.8%
2j8aA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 45.0 3.97e-01 100.0% 98.9%
1y0gA00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.52 46.0 3.27e-01 100.0% 87.6%
7dpyB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.52 44.0 3.85e-01 93.0% 98.8%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 40.0 3.97e-01 100.0% 83.1%
4zciA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 44.0 3.69e-01 98.2% 57.4%
3ghgB02 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.51 41.0 2.79e-01 98.2% 80.5%
1mkeA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 43.0 3.30e-01 100.0% 55.6%
5o9iA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.51 45.0 3.20e-01 100.0% 40.4%
2imzA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.51 44.0 3.34e-01 100.0% 46.5%
8ct0B01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 44.0 3.18e-01 100.0% 79.5%
1havB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.50 44.0 3.69e-01 100.0% 60.2%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3960756 2004.1.1.36 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N 0.70 49.0 3.00e-01 100.0% 12.5%
4937158 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 49.0 4.88e-01 100.0% 75.0%
3197566 4.1.1.89 ↗ beta barrels › SH3 › SH3 › SH3 › SM-ATX 0.66 59.0 4.90e-01 100.0% 80.0%
3883725 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 57.0 4.61e-01 100.0% 97.4%
5037228 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.66 57.0 5.47e-01 96.5% 84.6%
4030011 4.1.1.89 ↗ beta barrels › SH3 › SH3 › SH3 › SM-ATX 0.66 56.0 4.86e-01 96.5% 74.4%
3267672 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 44.0 3.89e-01 100.0% 49.4%
3786396 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.63 57.0 4.33e-01 100.0% 46.9%
3415498 269.1.1.1 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C 0.62 55.0 3.56e-01 100.0% 47.7%
4190110 269.1.1.2 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C,Fib_alpha 0.62 55.0 3.34e-01 100.0% 38.1%
2083983 269.1.1.2 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C,Fib_alpha 0.62 55.0 3.44e-01 100.0% 46.5%
4343999 11.1.1.12 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Filamin 0.62 43.0 4.32e-01 100.0% 71.7%
3911174 269.1.1.1 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C 0.61 54.0 3.39e-01 100.0% 42.8%
4033484 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 53.0 5.16e-01 100.0% 87.5%
3396269 269.1.1.1 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C 0.61 54.0 3.69e-01 100.0% 55.0%
4034317 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 52.0 5.05e-01 98.2% 87.3%
3393354 269.1.1.1 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C 0.60 54.0 3.62e-01 100.0% 52.1%
5048974 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 53.0 4.29e-01 100.0% 55.5%
3507385 269.1.1.1 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C 0.60 53.0 3.59e-01 100.0% 59.3%
3517374 269.1.1.1 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C 0.59 52.0 3.41e-01 100.0% 49.4%
3967986 4.7.1.2 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF 0.59 52.0 4.69e-01 100.0% 72.5%
3990594 269.1.1.1 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C 0.59 52.0 3.53e-01 100.0% 53.5%
3464303 4.25.1.0 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain 0.56 46.0 3.55e-01 100.0% 81.9%
4976092 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 49.0 4.25e-01 100.0% 64.4%
4502283 269.1.1.1 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C 0.55 48.0 3.27e-01 100.0% 58.3%
5062678 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.55 50.0 3.88e-01 100.0% 98.3%
3703449 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.55 45.0 4.27e-01 100.0% 92.0%
4519111 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.55 46.0 4.00e-01 100.0% 61.1%
3411284 270.1.1.2 ↗ beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C 0.55 41.0 3.32e-01 80.7% 71.8%
4455935 304.102.1.7 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.54 41.0 2.87e-01 87.7% 97.3%
3612351 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 46.0 4.23e-01 98.2% 88.0%
3401719 269.1.1.0 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like 0.54 45.0 3.22e-01 98.2% 81.6%
4088621 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.53 38.0 3.11e-01 100.0% 41.0%
3801941 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.53 41.0 3.34e-01 100.0% 42.6%
3838132 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.53 37.0 3.34e-01 100.0% 51.2%
4033291 9.5.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein TT1927B › Hypothetical protein TT1927B › YceI 0.53 46.0 3.31e-01 100.0% 88.8%
3842576 220.1.1.67 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › EVH1_PP4R3 0.52 41.0 3.35e-01 91.2% 81.7%
4605381 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.52 36.0 3.26e-01 100.0% 51.2%
3273875 73.1.1.0 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.52 43.0 3.63e-01 98.2% 100.0%
4299010 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 44.0 3.83e-01 100.0% 60.0%
4124823 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.52 37.0 3.07e-01 100.0% 41.9%
4313846 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.52 37.0 3.08e-01 100.0% 42.3%
4026244 4135.1.1.0 ↗ beta duplicates or obligate multimers › MAL13P1.257-like › MAL13P1.257-like › MAL13P1.257-like 0.52 39.0 3.11e-01 87.7% 96.3%
4971412 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.52 47.0 3.25e-01 100.0% 43.3%
3826141 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 41.0 3.71e-01 100.0% 87.8%
4575287 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.51 36.0 2.94e-01 100.0% 38.9%
4519471 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.51 36.0 3.22e-01 100.0% 52.4%
2063288 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.51 36.0 2.61e-01 100.0% 25.9%
3219409 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 40.0 3.65e-01 98.2% 81.1%
3772640 10.21.1.1 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in ADAMTS13 › Jelly-roll domain in ADAMTS13 › ADAMTS_spacer1 0.50 44.0 3.38e-01 100.0% 44.0%
3895056 11.1.1.96 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.50 44.0 3.44e-01 100.0% 46.7%
3481106 4178.1.1.0 ↗ beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.50 43.0 3.12e-01 100.0% 33.9%
3723834 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 40.0 3.87e-01 100.0% 92.9%
3989019 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.50 43.0 3.51e-01 98.2% 51.8%