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MG592590.1__AUR96314.1__NVP1223O_17__00017

Bact-Vir

MG592590.1__AUR96314.1__NVP1223O_17__00017

Identity

Accession:
MG592590 ↗
Kingdom:
phage

Quality

87.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_1.223.O._10N.261.48.A9

TaxID: 1881350

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-139
PDB
Domain cluster: rep: KY421186.2__APZ82890.1__X__00067__D9-137
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qffA00 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.67 30.0 3.95e-01 89.2% 77.0%
2iw3A02 1.20.1390.20 Mainly Alpha › Up-down Bundle › PWI domain › 0.62 31.0 3.67e-01 96.4% 70.0%
3qybA02 1.10.8.270 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › putative rabgap domain of human tbc1 domain family member 14 like domains 0.61 27.0 3.31e-01 93.5% 62.4%
1orjD00 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.59 31.0 3.30e-01 99.3% 55.2%
3iqcA00 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.58 31.0 3.37e-01 99.3% 58.8%
2ob9A00 3.30.2220.20 Alpha Beta › 2-Layer Sandwich › rbstp2171 › Phage tail assembly chaperone gp13-like 0.58 38.0 4.23e-01 83.5% 86.0%
3kavA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.54 30.0 3.49e-01 98.6% 73.5%
1d0qA00 3.90.580.10 Alpha Beta › Alpha-Beta Complex › DNA Primase; Chain A › Zinc finger, CHC2-type domain 0.54 28.0 3.18e-01 72.7% 63.7%
2jx0A00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.54 32.0 3.36e-01 98.6% 62.6%
3lysA00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.54 32.0 3.55e-01 92.1% 74.3%
4gh9A01 1.10.8.950 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Filoviridae VP35, C-terminal inhibitory domain, helical subdomain 0.53 28.0 3.74e-01 87.1% 98.6%
6dkuA01 1.10.8.950 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Filoviridae VP35, C-terminal inhibitory domain, helical subdomain 0.52 29.0 3.66e-01 91.4% 100.0%
2qsbA00 1.20.1440.50 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like 0.52 31.0 3.85e-01 84.9% 97.6%
6t0bc02 1.20.120.80 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle 0.50 37.0 3.36e-01 77.0% 86.9%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
333304 6050.1.1.1 ↗ a+b two layers › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage_TAC_1 0.59 38.0 4.27e-01 84.2% 85.6%
167831 601.16.1.3 ↗ alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase › GIT1_C 0.54 32.0 3.36e-01 98.6% 62.6%
4033375 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.52 40.0 3.79e-01 82.0% 97.6%
4968618 611.6.1.0 ↗ alpha bundles › N-cbl like › PT26-6P helical domain › PT26-6P helical domain 0.52 32.0 3.69e-01 99.3% 86.7%
3615974 3755.3.1.288 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › LMBR1 0.52 28.0 2.90e-01 77.7% 53.4%
3730884 192.29.1.208 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF7708 0.50 42.0 3.58e-01 89.9% 76.0%