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MG592598.1__AUR96914.1__NVP1233B_41__00041

Bact-Vir

MG592598.1__AUR96914.1__NVP1233B_41__00041

Identity

Accession:
MG592598 ↗
Kingdom:
phage

Quality

77.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-74
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fupA00 1.20.58.300 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › FlgN-like 0.88 56.0 4.20e-01 100.0% 29.9%
2rkkA01 1.25.40.270 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Vacuolar protein sorting-associated protein vta1 0.85 54.0 3.86e-01 100.0% 24.4%
2vkjA00 1.20.58.2030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.79 54.0 4.36e-01 70.7% 42.5%
3t98B00 6.10.140.1350 Special › Helix non-globular › Helix Hairpins › 0.77 55.0 4.80e-01 100.0% 51.2%
1o82A00 1.20.225.10 Mainly Alpha › Up-down Bundle › Bacteriocin As-48; Chain A › Bacteriocin AS-48 0.75 63.0 5.90e-01 91.4% 98.6%
4fppB01 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.73 58.0 5.36e-01 100.0% 69.0%
1b06A01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.73 49.0 4.73e-01 100.0% 61.2%
2v6yA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.72 58.0 5.24e-01 100.0% 65.3%
1aepA00 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.69 59.0 4.40e-01 100.0% 67.3%
4adnA01 1.20.1280.250 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.67 58.0 5.20e-01 100.0% 83.5%
2o36A01 1.20.1050.40 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › Endopeptidase. Chain P; domain 1 0.66 49.0 3.83e-01 100.0% 36.7%
3ne5B04 6.10.140.730 Special › Helix non-globular › Helix Hairpins › 0.66 53.0 5.60e-01 93.1% 100.0%
6rxaA01 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.65 45.0 3.91e-01 98.3% 48.3%
4rm7A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.65 46.0 3.54e-01 100.0% 31.7%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 62.0 5.68e-01 100.0% 83.1%
3qo8A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.65 61.0 4.85e-01 100.0% 70.8%
4f6cB00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.64 45.0 2.76e-01 74.1% 21.7%
3r84A00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 61.0 5.33e-01 100.0% 71.6%
1hr5A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.64 43.0 4.57e-01 100.0% 85.4%
3rrkA02 1.20.1460.20 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › 0.64 60.0 4.25e-01 100.0% 51.0%
2kg7B00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.64 49.0 4.15e-01 100.0% 50.5%
3tviA01 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.63 54.0 3.55e-01 100.0% 53.7%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.62 47.0 3.82e-01 100.0% 43.6%
4gzrC00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.62 42.0 4.19e-01 100.0% 68.9%
1ku9A02 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.61 56.0 5.47e-01 100.0% 96.9%
2yukA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.61 45.0 3.92e-01 79.3% 62.2%
3h20A04 1.10.1240.50 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.61 45.0 3.94e-01 79.3% 61.8%
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.60 54.0 5.22e-01 98.3% 100.0%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.60 51.0 4.68e-01 98.3% 75.6%
2ycdA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.59 45.0 3.61e-01 100.0% 41.0%
2m4eA00 1.20.120.1930 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF16691 family 0.59 48.0 4.31e-01 93.1% 74.4%
2yf4F00 1.10.3420.10 Mainly Alpha › Orthogonal Bundle › putative ntp pyrophosphohydrolase like fold › putative ntp pyrophosphohydrolase like domain 0.58 45.0 3.41e-01 100.0% 35.0%
3ulqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 40.0 4.09e-01 84.5% 75.9%
2v9kA01 1.10.10.2050 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.57 43.0 4.51e-01 87.9% 96.0%
6r1nA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.56 47.0 3.94e-01 100.0% 53.4%
1ug3A02 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.56 44.0 3.49e-01 87.9% 72.7%
3r64A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.56 49.0 3.14e-01 100.0% 20.7%
6qumQ00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.56 50.0 4.62e-01 100.0% 89.2%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 39.0 3.60e-01 87.9% 55.0%
4u7bA01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.56 42.0 4.37e-01 81.0% 94.1%
4qdnA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.55 43.0 3.46e-01 84.5% 46.6%
4nqwB00 1.10.10.1320 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Anti-sigma factor, zinc-finger domain 0.55 39.0 3.63e-01 94.8% 60.3%
3rq9A00 1.10.287.2500 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 45.0 4.08e-01 91.4% 84.6%
4kw3A00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.54 44.0 2.93e-01 96.6% 25.9%
1x4pA00 1.10.10.790 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module 0.54 41.0 4.03e-01 86.2% 77.3%
3nuwA02 3.30.420.310 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, C-terminal domain 0.52 45.0 3.17e-01 100.0% 39.5%
2jpnA00 1.20.1280.210 Mainly Alpha › Up-down Bundle › Monooxygenase › Uncharacterised protein UvsW.1 0.52 39.0 3.57e-01 100.0% 60.8%
7s03A01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.51 37.0 3.90e-01 81.0% 100.0%
3t5vA00 1.25.40.990 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.50 41.0 2.63e-01 91.4% 34.4%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3286351 304.154.1.1 a+b two layers › Alpha-beta plaits › Regulator of polyketide synthase expression N-terminal domain › Regulator of polyketide synthase expression N-terminal domain › GGDEF_2 0.78 53.0 3.91e-01 70.7% 86.2%
3267 198.2.1.1 alpha arrays › Saposin-like › Bacteriocin AS-48-related › Bacteriocin AS-48-related › Bacteriocin_IId 0.75 63.0 5.90e-01 91.4% 98.6%
3925313 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.72 64.0 5.78e-01 100.0% 97.5%
3238992 2004.1.1.414 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 0.70 61.0 3.82e-01 100.0% 32.1%
5049423 3567.1.1.0 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.69 65.0 4.99e-01 100.0% 50.4%
3291410 592.2.1.0 alpha arrays › PWI domain-like › YugE-like › YugE-like 0.68 53.0 4.92e-01 84.5% 72.0%
3566066 198.1.1.8 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapA+SapB_2+SapB_1 0.68 59.0 3.95e-01 100.0% 33.3%
3510680 192.15.1.0 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.67 62.0 5.80e-01 100.0% 82.9%
3933184 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.67 58.0 5.37e-01 98.3% 96.0%
3222274 198.1.1.3 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_1 0.67 57.0 4.86e-01 100.0% 75.0%
3478238 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.66 51.0 4.42e-01 100.0% 54.4%
4464384 198.2.1.1 alpha arrays › Saposin-like › Bacteriocin AS-48-related › Bacteriocin AS-48-related › Bacteriocin_IId 0.66 54.0 5.08e-01 89.7% 97.1%
4950306 109.4.1.3617 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF7017 0.65 56.0 3.50e-01 91.4% 26.2%
3561663 3567.1.1.0 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.65 58.0 5.78e-01 100.0% 93.2%
3936293 198.1.1.3 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_1 0.65 57.0 4.85e-01 100.0% 83.2%
1879027 244.1.1.6 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase 0.64 46.0 2.77e-01 86.2% 11.5%
5048289 2004.1.3.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.64 43.0 3.00e-01 100.0% 21.6%
3190576 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.63 56.0 4.48e-01 100.0% 50.9%
3883758 109.4.1.938 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CKAP2_C 0.63 55.0 4.66e-01 96.6% 73.7%
3424523 604.5.1.7 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › ALMT 0.63 57.0 4.75e-01 100.0% 60.0%
3268175 198.1.1.3 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_1 0.62 54.0 5.00e-01 100.0% 98.7%
3257558 198.1.1.10 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2, SapB_1, Saposin 0.62 54.0 4.85e-01 98.3% 100.0%
3248091 198.1.1.2 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.61 53.0 4.70e-01 100.0% 91.8%
3198528 130.1.1.16 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 0.60 44.0 4.54e-01 84.5% 85.5%
4375034 7000.1.1.0 alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.60 47.0 4.81e-01 86.2% 100.0%
4936146 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.60 44.0 4.57e-01 81.0% 94.5%
3691898 109.4.1.330 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › BIG2_C 0.59 54.0 3.49e-01 100.0% 24.2%
4246456 3455.1.1.0 alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors 0.59 41.0 3.71e-01 72.4% 63.7%
1566530 198.1.1.2 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.59 50.0 4.55e-01 100.0% 95.1%
5017220 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 42.0 4.11e-01 77.6% 83.1%
4943532 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.58 48.0 4.61e-01 100.0% 78.6%
4964238 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.58 50.0 4.58e-01 100.0% 73.3%
3269592 198.1.1.2 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.57 47.0 4.27e-01 100.0% 95.3%
3937317 101.1.1.75 alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.56 41.0 4.34e-01 81.0% 96.0%
3522325 101.1.1.75 alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.55 46.0 4.50e-01 96.6% 92.3%
4267024 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.54 45.0 4.18e-01 100.0% 73.3%
3983493 101.1.2.244 alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.54 38.0 4.00e-01 72.4% 84.0%
3277954 2008.1.1.67 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RecC_C 0.54 47.0 2.99e-01 100.0% 64.9%
3963583 2008.1.1.67 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RecC_C 0.54 47.0 3.00e-01 100.0% 30.2%
4145433 2008.1.1.67 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RecC_C 0.54 44.0 2.89e-01 98.3% 66.0%
3986130 2008.1.1.67 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RecC_C 0.53 45.0 2.89e-01 100.0% 63.9%
3806070 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.53 38.0 4.00e-01 79.3% 100.0%
3477418 4992.1.1.12 extended segments › RelB-like › RelB-like › RelB-like › LIN9_C 0.53 40.0 3.43e-01 98.3% 50.5%
3590551 101.1.2.244 alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.53 39.0 4.22e-01 94.8% 94.0%
2808872 611.3.1.1 alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Med26 0.53 41.0 3.66e-01 89.7% 80.0%
3840952 601.19.1.39 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › LIN9_C 0.52 39.0 3.64e-01 98.3% 62.7%
4964894 2004.1.3.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.52 38.0 2.69e-01 82.8% 23.6%
4058002 184.1.1.1 alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Glycos_trans_3N 0.50 37.0 3.58e-01 91.4% 69.2%
4973692 182.1.3.0 alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX 0.50 43.0 3.63e-01 98.3% 86.0%