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MG592599.1__AUR96971.1__NVP1235O_38__00038

Bact-Vir

MG592599.1__AUR96971.1__NVP1235O_38__00038

Identity

Accession:
MG592599 ↗
Kingdom:
phage

Quality

79.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Zobellviridae› Vibrio_phage_1.235.O._10N.261.52.B2

TaxID: 1881352

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 129-246
PDB
Domain cluster: rep: NC_009604.1__YP_001294865.1__BcepNY3gene27__00028__D89-184
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1nt2B02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.87 47.0 6.26e-01 100.0% 95.5%
2bdeA03 1.20.58.1160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.85 50.0 6.19e-01 99.2% 90.9%
3eabE00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.81 40.0 4.62e-01 100.0% 65.1%
5j1gA00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.78 52.0 4.06e-01 100.0% 35.1%
4lwsA00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.76 52.0 5.61e-01 100.0% 82.0%
4u7iA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.75 39.0 4.36e-01 100.0% 63.4%
7utzR02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.73 44.0 3.33e-01 100.0% 26.0%
4iloA00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.73 54.0 4.18e-01 100.0% 38.1%
1wa8A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.72 46.0 4.97e-01 100.0% 76.8%
4ijjB00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.70 48.0 4.62e-01 96.6% 62.3%
4i0xG00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.69 40.0 5.09e-01 94.9% 100.0%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.69 46.0 5.48e-01 100.0% 100.0%
3pe0A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 42.0 4.40e-01 100.0% 69.8%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.67 52.0 5.42e-01 100.0% 87.2%
2ieqA00 1.20.5.300 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.65 46.0 5.31e-01 100.0% 97.7%
3lssA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.64 42.0 4.32e-01 100.0% 68.8%
4cgkA01 6.10.250.3150 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.64 50.0 4.01e-01 100.0% 44.9%
2q0oC00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.62 39.0 4.46e-01 90.7% 87.2%
3w3aG00 1.10.287.3240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.59 55.0 4.48e-01 100.0% 62.9%
3vkwA01 3.30.450.420 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.56 47.0 4.36e-01 92.4% 80.0%
2qksA01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 42.0 4.41e-01 94.9% 95.3%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 32.0 3.62e-01 83.1% 80.2%
1fxkC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 47.0 4.53e-01 100.0% 94.7%
3h14A00 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.51 41.0 2.96e-01 89.0% 91.9%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3615233 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.69 50.0 5.37e-01 100.0% 84.8%
4989315 4333.1.1.1 ↗ a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › Methylase_S 0.68 63.0 4.24e-01 100.0% 57.3%
4025655 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.64 50.0 5.55e-01 98.3% 98.9%
5057428 150.5.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.63 41.0 4.30e-01 98.3% 72.4%
3388407 1075.1.2.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.63 57.0 4.20e-01 100.0% 86.8%
3212884 5001.1.1.59 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Sri 0.63 50.0 3.64e-01 100.0% 31.1%
3615977 3755.3.1.73 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › ApoL 0.60 55.0 4.97e-01 100.0% 73.5%
3718200 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.59 55.0 5.46e-01 100.0% 92.8%
3710532 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.59 50.0 5.35e-01 97.5% 99.0%
4674295 223.1.1.43 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › CusS 0.58 50.0 4.37e-01 93.2% 83.9%
4951472 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.58 55.0 5.03e-01 100.0% 89.3%
4967223 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.58 55.0 5.28e-01 100.0% 100.0%
3506312 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.58 53.0 5.07e-01 97.5% 98.5%
4934732 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.57 55.0 5.52e-01 100.0% 99.2%
4936526 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.57 55.0 5.14e-01 100.0% 99.3%
3194774 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.57 51.0 3.91e-01 94.9% 99.6%
4990636 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.57 54.0 5.25e-01 100.0% 98.5%
4973468 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.57 54.0 5.07e-01 100.0% 95.0%
4160852 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.56 54.0 5.06e-01 99.2% 86.2%
4938398 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.56 54.0 4.99e-01 100.0% 82.1%
5000789 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.56 46.0 4.84e-01 99.2% 99.0%
4969864 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.56 54.0 5.18e-01 99.2% 90.8%
4283629 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.56 54.0 5.21e-01 100.0% 91.5%
5026722 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.56 53.0 5.06e-01 100.0% 86.7%
3594109 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.56 53.0 4.85e-01 100.0% 84.0%
3603411 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.56 52.0 4.96e-01 100.0% 85.2%
5041857 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.56 54.0 5.02e-01 100.0% 84.9%
4626792 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.56 52.0 4.79e-01 97.5% 99.3%
3896368 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.56 54.0 4.89e-01 100.0% 81.1%
3691694 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.56 52.0 5.16e-01 100.0% 93.6%
5053535 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.56 53.0 4.01e-01 100.0% 47.2%
3990696 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.55 51.0 4.22e-01 100.0% 71.5%
5079975 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.55 52.0 4.84e-01 100.0% 82.1%
4025990 3748.1.1.3 ↗ extended segments › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › eIF3h_C 0.55 51.0 5.07e-01 100.0% 95.8%
3948638 223.8.1.4 ↗ a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain › GAPES3 0.55 47.0 4.22e-01 92.4% 88.7%
4118829 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.55 52.0 4.84e-01 100.0% 83.6%
3629566 206.1.3.12 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › TTL 0.55 38.0 2.57e-01 70.3% 31.8%
4303742 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.55 52.0 5.16e-01 98.3% 97.5%
3995853 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.54 44.0 3.20e-01 87.3% 83.6%
3489283 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.54 52.0 4.93e-01 100.0% 88.9%
4976532 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.53 50.0 4.81e-01 98.3% 89.2%
4956419 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.53 49.0 4.83e-01 95.8% 95.1%
3599017 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.53 50.0 4.33e-01 100.0% 73.5%
3614646 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.53 47.0 4.35e-01 100.0% 87.1%
3398317 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.52 50.0 4.42e-01 100.0% 74.4%
3872563 604.1.1.1 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.52 36.0 3.67e-01 71.2% 93.9%
5073682 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.51 46.0 4.42e-01 100.0% 91.3%
D2 medium residues 4-70
PDB
Domain cluster: rep: MW824409.1__QZI92319.1__PODOV025v1_p0022__00022__D44-119
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2k0mA00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 54.0 4.66e-01 86.6% 70.2%
3e1sA04 2.30.30.940 Mainly Beta › Roll › SH3 type barrels. › 0.65 55.0 5.52e-01 97.0% 91.3%
7zoiA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.62 46.0 3.88e-01 82.1% 100.0%
3gt2A00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.60 44.0 3.57e-01 97.0% 39.3%
3aqfB00 4.10.1240.10 Few Secondary Structures › Irregular › Hormone receptor fold › GPCR, family 2, extracellular hormone receptor domain 0.60 41.0 3.66e-01 71.6% 59.8%
3ednA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.60 39.0 3.17e-01 80.6% 33.6%
2vseA04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.59 47.0 3.82e-01 92.5% 96.5%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.58 40.0 4.40e-01 91.0% 98.0%
3hwuA00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.57 48.0 3.89e-01 100.0% 66.7%
7r3mA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 47.0 4.43e-01 92.5% 85.4%
2avwD01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 48.0 3.89e-01 100.0% 71.6%
3rwxA01 2.40.128.340 Mainly Beta › Beta Barrel › Lipocalin › 0.57 44.0 3.77e-01 89.6% 94.2%
3nbxX04 2.40.128.430 Mainly Beta › Beta Barrel › Lipocalin › 0.56 47.0 4.15e-01 100.0% 96.3%
1m1fB00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.56 44.0 3.90e-01 89.6% 81.0%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 42.0 4.23e-01 83.6% 91.2%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 41.0 4.12e-01 89.6% 77.5%
2m5sA00 2.40.30.240 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.55 49.0 4.00e-01 100.0% 92.7%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 46.0 4.57e-01 95.5% 94.3%
3pieB05 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 45.0 4.65e-01 94.0% 100.0%
2gk6A02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.54 45.0 4.25e-01 98.5% 75.9%
3pfsB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 45.0 3.68e-01 95.5% 67.7%
3vhxF00 2.60.40.4330 Mainly Beta › Sandwich › Immunoglobulin-like › Kinesin-like protein Kif23, Arf6-interacting domain 0.53 36.0 3.19e-01 70.1% 47.1%
1a31A03 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.53 37.0 3.01e-01 76.1% 56.0%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.53 44.0 3.53e-01 97.0% 46.4%
3a35A01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.53 47.0 4.24e-01 100.0% 84.8%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.52 35.0 3.90e-01 88.1% 97.9%
2v1lA00 3.10.450.430 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Protein of unknown function DUF2787 0.52 44.0 3.64e-01 100.0% 90.7%
4a4yA01 2.60.200.50 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.51 41.0 3.73e-01 94.0% 88.8%
4kghA00 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.51 39.0 2.93e-01 86.6% 83.9%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.51 45.0 4.25e-01 98.5% 96.2%
1r77A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 43.0 3.82e-01 97.0% 99.0%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 40.0 4.17e-01 97.0% 100.0%
1gd5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.51 35.0 2.97e-01 76.1% 91.5%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3278853 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 58.0 5.89e-01 88.1% 89.2%
4030850 4.1.1.165 ↗ beta barrels › SH3 › SH3 › SH3 › DUF6501 0.67 53.0 4.82e-01 83.6% 65.9%
3223830 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 46.0 5.09e-01 79.1% 96.0%
5054597 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.66 58.0 5.67e-01 100.0% 94.7%
3794450 219.1.1.25 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › LRAT 0.65 58.0 4.43e-01 100.0% 63.9%
3669214 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.64 55.0 4.48e-01 97.0% 86.9%
3921963 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.64 55.0 4.41e-01 97.0% 94.1%
3357239 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.64 56.0 4.26e-01 98.5% 75.3%
3816455 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.64 56.0 4.58e-01 98.5% 94.4%
3300226 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.64 55.0 5.19e-01 95.5% 100.0%
3491785 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.64 55.0 4.62e-01 97.0% 95.7%
3710007 4.1.1.372 ↗ beta barrels › SH3 › SH3 › SH3 › PF30207 0.63 55.0 4.60e-01 98.5% 99.2%
5022448 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 55.0 5.31e-01 97.0% 98.7%
None — 0.63 56.0 3.44e-01 100.0% 21.0%
3425872 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.62 52.0 4.71e-01 92.5% 87.8%
3255737 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.62 53.0 4.41e-01 97.0% 93.3%
3363448 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.61 53.0 4.96e-01 98.5% 95.3%
3598284 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 43.0 4.65e-01 94.0% 92.7%
3592525 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 51.0 4.34e-01 95.5% 71.8%
3928136 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 47.0 4.96e-01 91.0% 98.3%
3252937 1.1.7.35 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › E1_FCCH 0.59 52.0 4.50e-01 100.0% 90.5%
4085589 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.59 50.0 4.74e-01 100.0% 80.0%
4210485 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.58 45.0 4.64e-01 95.5% 89.2%
3616007 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.58 43.0 4.66e-01 92.5% 100.0%
4400641 4.1.1.397 ↗ beta barrels › SH3 › SH3 › SH3 › PF29622 0.57 49.0 4.69e-01 95.5% 98.8%
3687555 4.1.1.320 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_CYT4 0.57 44.0 3.88e-01 91.0% 56.0%
3929373 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.57 46.0 4.84e-01 94.0% 100.0%
2625578 219.1.1.163 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PF31135 0.57 48.0 3.85e-01 97.0% 65.0%
3897826 220.1.1.161 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26659 0.56 43.0 3.72e-01 86.6% 70.4%
3180042 1.1.7.24 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 0.56 48.0 4.12e-01 100.0% 73.0%
3414063 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.56 42.0 4.45e-01 89.6% 100.0%
4319097 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 41.0 4.34e-01 94.0% 91.4%
3491784 220.1.1.158 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 0.56 43.0 3.60e-01 88.1% 77.6%
3934192 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 43.0 4.56e-01 89.6% 96.7%
3411238 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.55 48.0 3.23e-01 100.0% 61.8%
4977469 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.55 44.0 4.43e-01 100.0% 88.6%
3723175 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.55 47.0 4.32e-01 100.0% 87.8%
3927795 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 45.0 4.68e-01 91.0% 100.0%
3272448 11.21.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.55 48.0 4.30e-01 100.0% 82.1%
3170404 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 43.0 3.86e-01 94.0% 60.0%
3284813 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 43.0 4.19e-01 89.6% 100.0%
3592075 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 46.0 4.31e-01 97.0% 87.1%
3417047 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.53 44.0 4.44e-01 100.0% 95.4%
3690254 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 47.0 4.29e-01 100.0% 81.1%
5061147 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 45.0 4.09e-01 98.5% 78.9%
3675653 4.1.1.239 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.53 46.0 4.45e-01 97.0% 97.3%
3619619 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 42.0 4.23e-01 97.0% 87.1%
3515762 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.53 44.0 4.27e-01 95.5% 86.7%
3925589 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 43.0 4.33e-01 92.5% 100.0%
3247934 1.1.7.41 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › UPF1_1B_dom 0.52 47.0 4.15e-01 100.0% 74.7%
3589548 11.1.4.36 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › SpaA 0.52 44.0 3.55e-01 100.0% 49.0%
3199753 2002.1.1.33 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_20 0.52 41.0 2.51e-01 92.5% 31.4%
5035934 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.52 43.0 4.36e-01 95.5% 95.4%
147657 73.1.1.5 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › PrgH 0.52 41.0 3.52e-01 94.0% 71.3%
135442 220.1.1.42 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › INPP5B_PH 0.51 39.0 3.11e-01 86.6% 66.7%
4948250 4.1.1.301 ↗ beta barrels › SH3 › SH3 › SH3 › MJ1316 0.51 36.0 3.65e-01 83.6% 80.0%
3536595 2004.1.1.413 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Tudor_2 0.51 43.0 3.51e-01 97.0% 88.5%
D3 medium residues 78-125
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4a6fA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 43.0 3.41e-01 72.9% 78.1%
1rniA01 3.30.720.160 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Bifunctional DNA primase/polymerase, N-terminal 0.62 48.0 4.39e-01 91.7% 87.1%
4eq3A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 48.0 3.85e-01 87.5% 70.4%
2dn6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 42.0 3.20e-01 72.9% 67.0%
3bb7A01 3.90.70.50 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) 0.60 47.0 3.44e-01 100.0% 46.0%
2j7vB01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.59 47.0 3.04e-01 95.8% 28.2%
6sjqA00 3.10.20.650 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.59 52.0 3.96e-01 100.0% 72.2%
1a0iA01 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.59 47.0 4.08e-01 95.8% 67.5%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 45.0 3.85e-01 97.9% 78.0%
1bpvA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 44.0 3.47e-01 87.5% 67.3%
3fzqA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.55 44.0 3.50e-01 100.0% 69.6%
5j3tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 40.0 3.03e-01 81.2% 63.5%
1m2gA02 3.30.1600.10 Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' 0.54 42.0 3.67e-01 100.0% 63.4%
8os3A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 42.0 3.47e-01 87.5% 77.2%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 44.0 3.18e-01 100.0% 31.2%
3floB00 1.10.3200.20 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › DNA Polymerase alpha, zinc finger 0.54 37.0 2.58e-01 70.8% 78.9%
2gnrA01 6.10.30.10 Special › Helix non-globular › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › 0.54 39.0 3.47e-01 77.1% 60.9%
5z0uA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 39.0 3.00e-01 81.2% 65.3%
4me3A03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.54 36.0 3.50e-01 70.8% 94.5%
5zspA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 38.0 2.88e-01 95.8% 28.7%
2hhzA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 41.0 3.07e-01 91.7% 46.4%
1zc1A01 2.40.40.50 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › Ubiquitin fusion degradation protein UFD1, N-terminal domain 0.53 44.0 3.56e-01 100.0% 89.3%
2yuxA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 40.0 3.23e-01 87.5% 63.9%
3h8hA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 41.0 3.50e-01 97.9% 96.7%
2c60A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 42.0 3.74e-01 100.0% 96.2%
7eehA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.52 40.0 2.71e-01 95.8% 83.1%
3i3tA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.52 42.0 2.68e-01 100.0% 29.4%
2l72A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.52 39.0 2.97e-01 93.8% 33.9%
4n0rA03 2.60.40.3950 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 41.0 3.28e-01 93.8% 84.5%
4lsdF00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 37.0 3.07e-01 81.2% 69.4%
1ltlA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.52 35.0 3.52e-01 72.9% 93.9%
6hj2A00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.51 39.0 2.45e-01 85.4% 55.5%
3tj8A02 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.51 41.0 3.57e-01 100.0% 58.1%
2ph7A02 3.40.50.10670 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › af2093 domain 0.50 34.0 2.89e-01 75.0% 40.6%
3am2A02 2.60.120.1050 Mainly Beta › Sandwich › Jelly Rolls › 0.50 39.0 3.15e-01 97.9% 95.7%
2c00A03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.50 38.0 3.55e-01 93.8% 82.4%
4pofA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.50 34.0 3.40e-01 70.8% 94.0%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3472024 384.1.1.1 ↗ few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI 0.67 45.0 4.31e-01 75.0% 60.0%
5042224 221.1.1.50 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF4430 0.66 57.0 4.14e-01 100.0% 69.3%
4946007 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.66 55.0 4.09e-01 97.9% 71.9%
5061602 221.1.1.50 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF4430 0.65 56.0 4.26e-01 100.0% 83.3%
3595236 7563.1.1.0 ↗ a/b three-layered sandwiches › MCP/YpsA-related › MCP/YpsA-related › MCP/YpsA-related 0.64 50.0 3.13e-01 89.6% 56.9%
5042794 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.64 54.0 4.00e-01 100.0% 71.0%
3925245 2.1.1.37 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_NTP_bind 0.61 49.0 4.17e-01 89.6% 67.5%
4887308 275.1.1.0 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 0.60 51.0 4.88e-01 100.0% 87.9%
4076504 7527.1.1.2 ↗ a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › CoA_transf_3 0.59 38.0 2.29e-01 85.4% 8.3%
3655450 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.59 43.0 2.51e-01 83.3% 8.4%
3723264 4012.4.1.0 ↗ a+b two layers › SSHS domain › DPAGT1 insertion domain › DPAGT1 insertion domain 0.58 45.0 4.63e-01 100.0% 91.1%
3913606 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 46.0 3.81e-01 87.5% 82.2%
5044440 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.57 49.0 3.68e-01 97.9% 79.2%
396031 4.22.1.1 ↗ beta barrels › SH3 › Hypothetical protein ORF131 › Hypothetical protein ORF131 › PSV_ORF131-like_dom 0.57 45.0 3.76e-01 97.9% 69.3%
5008219 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.57 50.0 3.94e-01 100.0% 65.0%
3733040 101.1.2.22 ↗ alpha arrays › HTH › HTH › winged helix domain › PCI 0.56 42.0 3.52e-01 83.3% 62.2%
5057274 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 40.0 3.44e-01 81.2% 76.5%
5051138 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.55 42.0 3.07e-01 97.9% 73.9%
2553542 188.1.1.2 ↗ alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep,SRC-1 0.54 41.0 2.48e-01 81.2% 24.8%
4958502 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.54 40.0 3.78e-01 87.5% 73.8%
5034970 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 40.0 3.30e-01 85.4% 82.0%
4970989 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.53 41.0 3.89e-01 95.8% 73.8%
3845679 355.1.1.6 ↗ few secondary structure elements › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › MGC-24 0.53 35.0 3.44e-01 70.8% 60.0%
3842649 11.1.1.584 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CATSPERE_NTD2 0.53 46.0 3.47e-01 100.0% 64.2%
3928042 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 39.0 3.24e-01 87.5% 76.0%
4221103 228.1.1.1 ↗ a+b three layers › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Sod_Fe_C 0.53 37.0 3.25e-01 77.1% 93.6%
3028533 188.1.1.0 ↗ alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain 0.52 44.0 2.77e-01 97.9% 65.2%
4457666 304.22.1.1 ↗ a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C 0.51 40.0 3.43e-01 100.0% 52.5%
3568670 11.1.4.69 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CATSPERE_NTD2 0.51 44.0 3.33e-01 100.0% 61.6%
4970102 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.51 36.0 3.02e-01 77.1% 56.7%
5062730 11.1.4.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.51 35.0 3.12e-01 77.1% 61.3%
3545014 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.50 37.0 3.08e-01 85.4% 71.0%
4645846 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.50 42.0 2.94e-01 100.0% 27.6%