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MG592601.1__AUR97060.1__NVP1237A_01__00001

Bact-Vir

MG592601.1__AUR97060.1__NVP1237A_01__00001

Identity

Accession:
MG592601 ↗
Kingdom:
phage

Quality

75.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_1.237.A._10N.261.52.C5

TaxID: 1881353

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-52
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.75 56.0 4.00e-01 100.0% 28.8%
3e1sA04 2.30.30.940 Mainly Beta › Roll › SH3 type barrels. › 0.69 58.0 5.01e-01 100.0% 60.9%
2g7jA00 3.90.1150.40 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Protein of unknown function DUF2002 0.68 49.0 3.70e-01 77.8% 31.2%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 53.0 4.74e-01 100.0% 60.9%
2pmlX01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.67 49.0 3.58e-01 93.3% 29.0%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 54.0 5.00e-01 100.0% 71.4%
6o5cA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.66 59.0 4.96e-01 100.0% 69.7%
2gcjA01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.66 45.0 3.30e-01 100.0% 24.6%
1ex4B02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.66 52.0 4.80e-01 100.0% 66.1%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.65 46.0 3.34e-01 77.8% 42.0%
1p38A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.65 52.0 3.73e-01 91.1% 34.0%
3kihC01 2.20.25.510 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.65 40.0 4.38e-01 95.6% 79.4%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.65 47.0 3.57e-01 100.0% 31.9%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.64 51.0 4.71e-01 100.0% 68.3%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 53.0 4.96e-01 100.0% 75.4%
1ov3A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 54.0 5.12e-01 100.0% 87.3%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 52.0 5.14e-01 97.8% 89.4%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.62 53.0 4.19e-01 100.0% 46.8%
2e8eA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.61 37.0 2.68e-01 91.1% 19.7%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 52.0 4.82e-01 100.0% 83.1%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 51.0 4.30e-01 100.0% 62.0%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 50.0 4.74e-01 100.0% 82.5%
3pe0A03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 49.0 4.43e-01 100.0% 67.2%
2jxbA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 50.0 4.12e-01 100.0% 55.8%
5zl6A01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.58 41.0 3.08e-01 84.4% 45.7%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 48.0 4.37e-01 100.0% 76.6%
2bzlA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.57 44.0 2.72e-01 88.9% 28.9%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 47.0 4.05e-01 100.0% 62.8%
6o1wA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 43.0 2.76e-01 91.1% 90.2%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 45.0 3.46e-01 100.0% 42.0%
4tquS02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 43.0 3.98e-01 95.6% 95.3%
1dwnA00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.54 43.0 3.17e-01 100.0% 32.3%
3bs1A00 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.54 43.0 3.40e-01 93.3% 42.7%
3nksA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 42.0 2.46e-01 91.1% 57.0%
4fk5A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 38.0 2.37e-01 100.0% 11.7%
1jb7A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 41.0 3.15e-01 86.7% 64.7%
2krsA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 43.0 4.01e-01 95.6% 88.3%
2chrA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 39.0 3.13e-01 97.8% 84.3%
3toyA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 40.0 3.19e-01 100.0% 80.3%
2i2lA01 2.10.70.50 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.52 37.0 3.61e-01 80.0% 75.0%
1v5rA00 3.30.920.20 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Gas2-like domain 0.51 36.0 2.98e-01 80.0% 56.7%
6iikB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 42.0 2.55e-01 100.0% 85.9%
2odhA02 3.30.70.3570 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MvaI/BcnI restriction endonuclease, recognition domain 0.51 35.0 2.85e-01 80.0% 62.7%
2ec1A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 38.0 2.89e-01 84.4% 77.1%
2zadA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.50 37.0 3.10e-01 97.8% 87.7%
3ijlA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.50 36.0 3.09e-01 95.6% 88.9%
2jrbA00 3.30.250.20 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › L1 transposable element, C-terminal domain 0.50 35.0 3.25e-01 77.8% 58.5%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
224033 219.1.1.65 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › GspA_C39-like 0.75 56.0 4.08e-01 100.0% 31.0%
5054597 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.69 62.0 5.20e-01 100.0% 68.0%
540 4.1.1.8 ↗ beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.68 54.0 5.33e-01 100.0% 81.2%
4584943 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 56.0 4.81e-01 100.0% 58.6%
4104821 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.67 55.0 4.66e-01 100.0% 54.7%
5077873 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.66 59.0 4.85e-01 100.0% 64.6%
4505797 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.66 53.0 4.77e-01 100.0% 63.1%
3590315 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.66 58.0 4.89e-01 100.0% 68.0%
140040 4216.1.1.3 ↗ a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › LFE_1968-like 0.65 46.0 3.34e-01 77.8% 42.0%
3517651 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 55.0 4.62e-01 100.0% 56.0%
2772566 4.11.1.3 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Phage_CI_C 0.65 46.0 3.55e-01 100.0% 31.6%
3931369 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 55.0 5.40e-01 100.0% 96.0%
3523046 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 54.0 4.41e-01 100.0% 55.3%
3934527 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 55.0 5.18e-01 100.0% 89.1%
3778124 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.61 53.0 4.73e-01 100.0% 72.3%
3512420 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 53.0 4.35e-01 100.0% 55.3%
3623786 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.61 53.0 4.72e-01 100.0% 72.3%
3550579 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 52.0 4.96e-01 100.0% 85.5%
3222210 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.60 52.0 4.52e-01 100.0% 68.6%
4030603 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 51.0 4.55e-01 100.0% 69.1%
3998645 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.60 51.0 4.58e-01 100.0% 72.3%
3561462 148.1.3.384 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › SH3_2 0.60 51.0 3.45e-01 100.0% 27.6%
4056584 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 50.0 4.23e-01 100.0% 58.7%
4602101 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.59 50.0 4.52e-01 100.0% 83.1%
3230400 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 49.0 4.45e-01 100.0% 84.6%
3294025 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 49.0 4.71e-01 100.0% 96.4%
3216746 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.58 48.0 4.55e-01 95.6% 85.5%
3259044 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.58 49.0 4.64e-01 100.0% 85.5%
3715569 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 41.0 2.81e-01 84.4% 36.9%
1031943 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.56 47.0 4.10e-01 100.0% 66.2%
4126797 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.54 40.0 3.75e-01 91.1% 63.3%
3466381 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 41.0 3.22e-01 88.9% 62.7%
3273029 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.54 41.0 2.63e-01 88.9% 32.9%
4307219 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.54 41.0 3.93e-01 88.9% 72.7%
4040055 4.26.1.1 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Cren7 0.53 46.0 4.27e-01 100.0% 94.8%
3941913 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.53 42.0 4.05e-01 93.3% 76.4%
4351809 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.53 41.0 3.86e-01 93.3% 68.3%
3311685 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.52 37.0 2.47e-01 100.0% 17.6%
4629529 2002.1.1.420 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI, PF25918 0.52 38.0 2.18e-01 93.3% 8.6%
4276957 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.51 40.0 3.88e-01 93.3% 76.4%
3505004 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.51 37.0 2.96e-01 100.0% 40.0%
1413813 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.50 40.0 3.81e-01 91.1% 76.4%
339669 218.1.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.50 37.0 3.03e-01 97.8% 81.3%
3990000 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.50 40.0 3.81e-01 91.1% 76.4%