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MG592602.1__AUR97157.1__NVP1237B_03__00003

Bact-Vir

MG592602.1__AUR97157.1__NVP1237B_03__00003

Identity

Accession:
MG592602 ↗
Kingdom:
phage

Quality

95.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_1.237.B._10N.261.52.C5

TaxID: 1881354

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-71
PDB
Domain cluster: rep: MK448232.1__QBP28443.1__X__00024__D6-71
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10834.15 best DUF2560 27.8 3.30e-06 95.7% 79.2%
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7qovB01 1.10.472.20 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Nitrile hydratase, beta subunit 0.70 51.0 4.46e-01 78.3% 59.3%
1jqjD03 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.64 52.0 4.90e-01 91.3% 77.9%
2wcjA00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.60 51.0 4.05e-01 94.2% 48.9%
1m6nA04 1.10.3060.10 Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA 0.59 44.0 3.64e-01 82.6% 67.4%
5xs2B02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.58 45.0 3.73e-01 87.0% 46.2%
3umbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.58 49.0 4.70e-01 94.2% 81.0%
2e9fB01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.57 42.0 3.76e-01 78.3% 68.8%
2mqaA00 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.57 43.0 3.63e-01 84.1% 98.4%
2oznB01 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.57 41.0 3.95e-01 76.8% 90.0%
4du5B00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.57 49.0 3.24e-01 98.6% 30.5%
3n3dB00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.55 46.0 3.08e-01 97.1% 26.8%
2etdA00 1.20.1440.20 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › LemA-like domain 0.55 40.0 3.22e-01 78.3% 49.6%
1wcrA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.55 41.0 3.59e-01 79.7% 85.4%
3dkaB01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.54 39.0 3.26e-01 78.3% 96.3%
1lwbA00 1.20.90.10 Mainly Alpha › Up-down Bundle › Phospholipase A2 › Phospholipase A2 domain 0.54 37.0 3.16e-01 72.5% 44.3%
1eyvB00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.54 44.0 3.59e-01 91.3% 63.9%
1f68A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.53 40.0 3.61e-01 84.1% 79.6%
1ow4A00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.52 43.0 3.67e-01 94.2% 95.8%
2w45A01 1.20.120.860 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Herpesvirus alkaline exonuclease, N-terminal domain 0.52 41.0 3.56e-01 91.3% 62.9%
5grqA00 1.10.8.810 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Daxx helical bundle domain 0.51 41.0 3.82e-01 91.3% 78.9%
1ukcB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 38.0 2.39e-01 87.0% 35.9%
3v5uA01 6.10.280.80 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › NCX, peripheral helical region 0.51 31.0 2.99e-01 89.9% 53.9%
2yguC00 1.10.238.190 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › 0.51 44.0 3.74e-01 100.0% 94.9%
7e4gA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.51 36.0 2.76e-01 79.7% 67.5%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4955899 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.66 48.0 4.20e-01 88.4% 50.0%
4352674 632.1.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.59 43.0 3.77e-01 78.3% 77.1%
3202893 109.3.1.148 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Goodbye 0.55 46.0 3.49e-01 100.0% 65.1%
4583055 316.1.1.11 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › GrpB 0.53 45.0 3.55e-01 98.6% 94.4%
3232193 6155.1.1.2 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.52 39.0 3.09e-01 81.2% 63.4%
3858558 4207.1.2.5 ↗ alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region › TEX13 0.52 37.0 3.69e-01 78.3% 77.3%
4227779 604.5.1.0 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.52 45.0 3.27e-01 100.0% 82.4%
4652526 102.1.1.27 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.51 38.0 3.74e-01 82.6% 76.0%
3538105 4207.1.1.123 ↗ alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) › TEX13 0.51 36.0 2.92e-01 78.3% 39.3%