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MG592607.1__AUR97621.1__NVP1242O_62__00062

Bact-Vir

MG592607.1__AUR97621.1__NVP1242O_62__00062

Identity

Accession:
MG592607 ↗
Kingdom:
phage

Quality

86.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_1.242.O._10N.261.54.B2

TaxID: 1881235

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-49
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1irxA05 1.10.10.350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.63 49.0 4.02e-01 89.4% 46.2%
3w6zA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.61 50.0 3.65e-01 100.0% 34.7%
2gtaA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.60 39.0 3.11e-01 70.2% 33.0%
4hteA02 1.20.58.1740 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 48.0 3.57e-01 87.2% 41.0%
2fe3B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 49.0 4.16e-01 100.0% 54.1%
3fiwA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 47.0 3.66e-01 100.0% 56.4%
1dxlA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.56 40.0 3.16e-01 93.6% 32.2%
2de2A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.55 46.0 3.11e-01 97.9% 47.4%
1dw9A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.55 46.0 3.85e-01 97.9% 86.2%
2iaiA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.52 40.0 3.73e-01 95.7% 75.4%
2fzlA02 6.10.140.1180 Special › Helix non-globular › Helix Hairpins › 0.52 42.0 3.90e-01 95.7% 85.5%
4i2aA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.51 39.0 3.75e-01 93.6% 79.7%
5f1cA01 1.10.287.940 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel 0.50 41.0 3.80e-01 89.4% 86.4%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3601326 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 47.0 4.36e-01 100.0% 61.5%
3696929 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 48.0 4.38e-01 100.0% 60.0%
5001590 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.62 50.0 4.88e-01 100.0% 85.5%
3208505 4156.1.1.2 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_N,HA2_C 0.60 45.0 3.00e-01 100.0% 17.9%
4422641 2004.1.1.363 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase+UvrD_C 0.59 45.0 2.56e-01 100.0% 6.7%
3274039 4143.1.1.1 ↗ a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › THUMP 0.58 50.0 3.20e-01 100.0% 20.0%
3588816 6056.1.1.2 ↗ alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N 0.57 43.0 3.84e-01 83.0% 60.0%
3211053 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.54 47.0 3.30e-01 100.0% 48.4%