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MG592609.1__AUR97780.1__NVP1244A_078__00078

Bact-Vir

MG592609.1__AUR97780.1__NVP1244A_078__00078

Identity

Accession:
MG592609 ↗
Kingdom:
phage

Quality

68.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Ackermannviridae› Vibrio_phage_1.244.A._10N.261.54.C3

TaxID: 1881412

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-58
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.74 50.0 4.99e-01 100.0% 68.8%
5yzzC00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.69 58.0 4.50e-01 100.0% 91.9%
1neiA00 3.30.160.220 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YoaG 0.68 39.0 3.59e-01 85.1% 38.3%
2gu1A01 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 58.0 4.80e-01 100.0% 73.9%
1s2kA00 2.60.120.700 Mainly Beta › Sandwich › Jelly Rolls › Peptidase G1 0.66 55.0 3.72e-01 100.0% 41.7%
2qkdA03 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.65 43.0 4.24e-01 100.0% 64.7%
5aykA07 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.64 53.0 4.12e-01 100.0% 65.2%
4k3bA04 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.63 42.0 3.67e-01 70.2% 55.1%
1sezA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 43.0 2.90e-01 100.0% 18.9%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 42.0 3.82e-01 100.0% 53.2%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 40.0 3.49e-01 100.0% 41.3%
7z7vC01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.62 51.0 3.75e-01 100.0% 33.9%
4makB00 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 42.0 3.62e-01 76.6% 46.1%
1vq8X00 3.10.440.10 Alpha Beta › Roll › Ribosomal Protein L31e; Chain: W; › Ribosomal protein L31 0.59 47.0 4.14e-01 97.9% 100.0%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 40.0 3.64e-01 100.0% 54.0%
3bu7A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 47.0 2.87e-01 100.0% 31.3%
1epfA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 51.0 3.98e-01 100.0% 61.3%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 38.0 3.44e-01 91.5% 50.7%
4huzA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 34.0 2.51e-01 100.0% 19.2%
4i0kA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 47.0 3.76e-01 100.0% 64.2%
6x4tA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 44.0 3.70e-01 97.9% 72.9%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 35.0 3.26e-01 91.5% 51.5%
2wacA01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 42.0 3.26e-01 100.0% 57.9%
4mh4A02 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.51 43.0 3.52e-01 97.9% 58.5%
2qlvB02 2.20.25.290 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.51 34.0 3.55e-01 100.0% 84.2%
1mc0A01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.51 41.0 3.00e-01 100.0% 30.4%
2i9wA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 40.0 2.85e-01 95.7% 58.0%
2b39A03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 44.0 3.28e-01 100.0% 54.4%
3dsbA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 36.0 3.07e-01 89.4% 46.5%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3515029 223.2.1.46 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › FNIP_N, FNIP_M 0.80 50.0 3.44e-01 100.0% 20.0%
3411035 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.77 47.0 5.41e-01 100.0% 96.7%
4048220 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.70 46.0 3.87e-01 100.0% 40.0%
3277842 4187.1.1.1 ↗ a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › MerB 0.68 40.0 3.75e-01 95.7% 45.0%
3325228 1.1.11.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain 0.67 56.0 4.55e-01 100.0% 96.9%
3310179 1.1.11.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain 0.67 56.0 4.49e-01 100.0% 97.0%
3511010 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.64 43.0 4.86e-01 100.0% 97.1%
5072662 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.64 55.0 4.03e-01 100.0% 63.7%
4862766 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 42.0 3.55e-01 100.0% 41.6%
3602836 284.1.3.6 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › DUF749 0.61 51.0 4.11e-01 100.0% 53.0%
3963519 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.60 49.0 4.56e-01 100.0% 98.5%
4950105 312.1.1.0 ↗ a+b three layers › HIT-like › HIT-related › HIT-related 0.59 40.0 2.75e-01 70.2% 25.1%
4618633 4.26.1.1 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Cren7 0.57 39.0 3.66e-01 100.0% 57.6%
3788985 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 47.0 3.41e-01 100.0% 31.7%
3519116 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 46.0 3.22e-01 100.0% 29.1%
4501626 874.1.1.0 ↗ a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain 0.54 42.0 2.45e-01 95.7% 8.9%
5004658 223.1.1.23 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 0.54 44.0 3.17e-01 100.0% 29.7%
4882461 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.53 38.0 3.22e-01 83.0% 70.0%
3853561 11.1.1.363 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_3 0.53 47.0 3.80e-01 100.0% 66.7%
3489129 11.1.1.233 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_mannosidase 0.53 43.0 3.45e-01 100.0% 69.1%
3240833 207.1.1.52 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.52 42.0 2.70e-01 100.0% 16.1%
167841 4.26.1.1 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Cren7 0.52 39.0 3.64e-01 83.0% 65.0%
5038162 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.52 35.0 2.43e-01 100.0% 19.4%
2579238 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.51 42.0 3.00e-01 97.9% 36.1%
4020396 3501.1.1.0 ↗ a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 0.50 36.0 3.07e-01 83.0% 65.6%