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MG592614.1__AUR98263.1__NVP1248O_49__00049

Bact-Vir

MG592614.1__AUR98263.1__NVP1248O_49__00049

Identity

Accession:
MG592614 ↗
Kingdom:
phage

Quality

89.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-70
PDB
Domain cluster: representative
CATH (60)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.74 65.0 5.99e-01 100.0% 79.2%
3db0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.67 49.0 3.92e-01 79.7% 57.3%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 51.0 4.99e-01 96.6% 78.1%
2furB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 48.0 3.40e-01 79.7% 48.9%
3lkmA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.65 50.0 3.78e-01 88.1% 87.9%
2ol5A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 47.0 3.37e-01 79.7% 51.4%
3otpA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.64 54.0 3.84e-01 100.0% 32.0%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 55.0 5.02e-01 94.9% 77.6%
3cpxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.63 46.0 4.58e-01 100.0% 75.8%
3u5wA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 46.0 3.68e-01 79.7% 55.6%
3jb9H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 54.0 5.06e-01 100.0% 93.4%
5hmaA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 52.0 4.49e-01 100.0% 61.5%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 55.0 5.21e-01 100.0% 93.1%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 54.0 4.73e-01 100.0% 70.7%
3teeA02 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.62 53.0 4.99e-01 98.3% 78.1%
2hq9B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 44.0 3.49e-01 79.7% 57.7%
3ec6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 44.0 3.57e-01 79.7% 53.9%
4qv2A02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.61 52.0 4.28e-01 100.0% 92.4%
1dleB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 51.0 3.99e-01 98.3% 76.1%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.61 53.0 4.21e-01 100.0% 47.2%
2ok5A02 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.61 51.0 3.56e-01 100.0% 59.8%
3ml4C01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 49.0 4.11e-01 93.2% 85.2%
1havB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 51.0 4.36e-01 100.0% 74.8%
2kr0A01 2.30.29.70 Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 0.60 49.0 4.03e-01 93.2% 77.0%
2hqvA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.60 50.0 3.73e-01 100.0% 51.7%
2y7bA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 48.0 3.78e-01 93.2% 78.4%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 45.0 3.99e-01 91.5% 78.0%
4ic5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 49.0 4.20e-01 100.0% 64.4%
1b7eA01 3.90.350.10 Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 0.59 44.0 3.03e-01 84.7% 32.5%
3tk9A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 41.0 3.39e-01 89.8% 41.1%
3ef2A02 3.30.460.70 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.57 48.0 3.78e-01 100.0% 93.5%
1boqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 47.0 4.05e-01 100.0% 56.1%
1n08A00 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.57 49.0 3.67e-01 100.0% 41.6%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 45.0 4.52e-01 91.5% 91.9%
3cp3A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 47.0 3.79e-01 100.0% 49.6%
1qftB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 43.0 3.29e-01 93.2% 86.4%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 44.0 3.68e-01 91.5% 88.2%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 43.0 4.40e-01 100.0% 94.9%
6wo0A01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.55 42.0 2.96e-01 86.4% 33.3%
1kkeA02 2.60.90.20 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Virus attachment protein , globular domain 0.54 44.0 3.37e-01 91.5% 42.6%
3cp7A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 44.0 3.67e-01 93.2% 49.5%
6mv2A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 45.0 3.88e-01 100.0% 74.3%
2o8lA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 43.0 3.65e-01 93.2% 52.5%
1zhhB01 3.30.450.220 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › LuxQ periplasmic domain, N-terminal subdomain 0.53 39.0 2.93e-01 79.7% 29.9%
2i4kA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 39.0 3.08e-01 79.7% 94.5%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.53 41.0 3.39e-01 93.2% 75.0%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 44.0 3.46e-01 100.0% 52.1%
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.52 44.0 3.77e-01 100.0% 97.2%
1t6eX01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.52 41.0 3.09e-01 93.2% 50.0%
2i9yA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 40.0 3.12e-01 93.2% 79.0%
2asfA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 43.0 3.48e-01 100.0% 52.8%
2p5zX01 2.30.110.50 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.51 39.0 2.97e-01 88.1% 86.7%
4ybnB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 42.0 3.02e-01 100.0% 30.7%
2htiA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 41.0 3.40e-01 100.0% 50.8%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 44.0 3.08e-01 100.0% 35.0%
2vrsA03 2.60.90.40 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.50 40.0 3.21e-01 93.2% 44.7%
2eixA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.50 44.0 3.66e-01 100.0% 67.9%
3c5vA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 38.0 2.52e-01 84.7% 31.6%
3dnhA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 41.0 3.22e-01 100.0% 43.7%
5tz6B02 3.10.129.120 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › 0.50 41.0 3.06e-01 89.8% 76.6%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4071824 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.74 65.0 6.04e-01 100.0% 82.7%
3439789 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.73 62.0 4.46e-01 96.6% 59.4%
4129418 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.68 51.0 3.94e-01 81.4% 64.4%
3236689 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 56.0 5.76e-01 100.0% 98.2%
3449628 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.68 59.0 4.78e-01 100.0% 52.2%
4929875 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.68 57.0 4.76e-01 98.3% 55.0%
3579212 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.67 51.0 4.20e-01 81.4% 69.5%
3206868 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 59.0 4.54e-01 100.0% 60.0%
3246086 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 58.0 4.98e-01 100.0% 63.2%
3855974 4.1.1.253 beta barrels › SH3 › SH3 › SH3 › DUF4537 0.66 56.0 5.23e-01 98.3% 81.3%
3845425 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 55.0 4.75e-01 98.3% 60.0%
3559960 2006.1.6.66 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF4537 0.65 56.0 5.37e-01 100.0% 88.6%
5034832 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 55.0 5.31e-01 100.0% 100.0%
4938115 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.64 56.0 5.22e-01 100.0% 94.6%
3781440 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.64 56.0 5.10e-01 100.0% 93.8%
147797 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.64 55.0 5.22e-01 94.9% 86.8%
5026284 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.63 54.0 4.71e-01 100.0% 81.1%
3999725 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 53.0 4.67e-01 98.3% 63.5%
5025498 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.63 54.0 4.78e-01 100.0% 86.7%
3864847 2487.1.1.0 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.63 50.0 3.82e-01 91.5% 99.3%
3582834 4.1.1.319 beta barrels › SH3 › SH3 › SH3 › SH3_Hsr9 0.63 55.0 4.73e-01 100.0% 72.6%
4238582 3174.2.1.1 beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA › ChapFlgA 0.63 54.0 5.40e-01 98.3% 95.0%
4768829 4059.1.1.1 a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.63 44.0 2.79e-01 74.6% 42.9%
3712782 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 51.0 4.68e-01 98.3% 68.8%
3226827 4.1.1.133 beta barrels › SH3 › SH3 › SH3 › SMN_YG-box 0.62 55.0 4.57e-01 100.0% 62.9%
3448643 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.62 52.0 3.70e-01 100.0% 32.7%
3816593 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.62 52.0 3.63e-01 100.0% 31.4%
3218545 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.62 54.0 4.83e-01 100.0% 97.6%
3222570 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 49.0 4.03e-01 93.2% 77.4%
3834563 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.60 51.0 4.69e-01 100.0% 81.2%
3794500 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.60 50.0 3.65e-01 100.0% 34.6%
3616769 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.60 49.0 4.39e-01 100.0% 65.3%
3555102 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 48.0 3.90e-01 93.2% 81.7%
4000622 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.59 51.0 4.12e-01 100.0% 50.0%
3936885 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 49.0 4.85e-01 98.3% 90.8%
3967745 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.58 46.0 4.39e-01 100.0% 73.3%
4136160 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.58 50.0 4.28e-01 100.0% 61.0%
4822902 1.1.17.3 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.58 48.0 3.65e-01 100.0% 37.3%
4930482 1.1.5.17 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.58 49.0 3.93e-01 100.0% 50.4%
319085 208.1.1.8 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › B_solenoid_ydck 0.57 43.0 2.73e-01 81.4% 24.8%
3482603 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 46.0 3.99e-01 93.2% 78.0%
3771406 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 45.0 3.69e-01 93.2% 81.6%
3744808 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.57 46.0 3.44e-01 100.0% 39.5%
3393358 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.56 46.0 4.11e-01 100.0% 64.2%
3910147 247.1.1.40 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › DRMBL, Anti-Pycsar_Apyc1 0.56 43.0 2.94e-01 86.4% 30.5%
3789113 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 44.0 2.96e-01 93.2% 29.5%
3503759 1.1.5.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.55 44.0 3.06e-01 100.0% 25.3%
2771045 247.1.1.30 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Anti-Pycsar_Apyc1 0.55 42.0 3.15e-01 86.4% 42.3%
3841771 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.55 40.0 3.08e-01 79.7% 80.0%
4341298 247.1.1.40 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › DRMBL, Anti-Pycsar_Apyc1 0.55 42.0 2.64e-01 86.4% 19.7%
3937489 59.1.3.0 beta complex topology › triple barrel › triple barrel › RNA polymerase I subunits A49/A34.5 dimerization domains 0.54 39.0 3.46e-01 78.0% 73.3%
4980573 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.54 44.0 3.12e-01 89.8% 34.7%
3780792 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.53 44.0 3.66e-01 98.3% 94.8%
4342673 212.1.1.18 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Lon_C 0.53 42.0 3.40e-01 89.8% 84.2%
2429452 1.1.5.31 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.53 46.0 3.59e-01 100.0% 46.2%
3963080 212.1.1.0 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.52 41.0 3.36e-01 89.8% 92.2%
3838439 212.1.1.18 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Lon_C 0.52 41.0 3.21e-01 89.8% 89.6%
5003403 284.1.1.0 a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.51 42.0 4.11e-01 94.9% 95.4%
3564807 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.51 36.0 2.89e-01 83.1% 76.1%
3879830 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.50 40.0 3.17e-01 94.9% 75.9%
3572941 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.50 44.0 3.70e-01 100.0% 67.6%
3667651 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.50 39.0 3.52e-01 93.2% 86.7%