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MG592617.1__AUR98405.1__NVP1250O_67__00067

Bact-Vir

MG592617.1__AUR98405.1__NVP1250O_67__00067

Identity

Accession:
MG592617 ↗
Kingdom:
phage

Quality

87.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_1.250.O._10N.261.55.E11

TaxID: 1881443

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-71
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1d3bC00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 38.0 3.85e-01 95.7% 53.5%
1nh2D02 2.30.18.10 Mainly Beta › Roll › TATA box binding Protein, subunit D; domain 2 › Transcription factor IIA (TFIIA), beta-barrel domain 0.68 37.0 4.34e-01 91.4% 77.1%
4f7uG00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 36.0 3.73e-01 94.3% 52.9%
6sakC00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.57 38.0 3.50e-01 70.0% 62.1%
5deqB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 41.0 3.91e-01 80.0% 73.5%
5bkaE01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 46.0 3.81e-01 100.0% 73.5%
2kyyA00 3.30.950.30 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Schlafen, AAA domain 0.53 38.0 3.09e-01 80.0% 88.2%
1yb3A00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.52 35.0 2.78e-01 92.9% 30.3%
6p4wB01 3.40.91.30 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.50 32.0 2.88e-01 95.7% 40.4%
3onrJ00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.50 30.0 3.05e-01 85.7% 61.8%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4934112 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.80 45.0 3.62e-01 100.0% 30.0%
5031240 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.74 42.0 3.41e-01 100.0% 30.4%
5025921 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.72 46.0 3.93e-01 94.3% 41.8%
4634054 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.70 39.0 3.21e-01 92.9% 30.4%
4947646 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.69 43.0 3.51e-01 100.0% 36.0%
4934478 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.65 40.0 3.25e-01 100.0% 32.6%
3268851 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.64 46.0 3.13e-01 100.0% 21.6%
4951715 2008.1.1.16 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.61 35.0 2.99e-01 100.0% 32.2%
5031791 2008.1.1.16 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.61 35.0 3.09e-01 100.0% 35.2%
5080539 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.61 35.0 2.74e-01 100.0% 24.8%
5080744 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.60 41.0 3.22e-01 100.0% 34.5%
4977249 2008.1.1.16 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.60 37.0 3.02e-01 92.9% 33.3%
4958221 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.59 35.0 2.35e-01 100.0% 14.9%
3923810 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.55 39.0 3.43e-01 100.0% 47.8%
4952470 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.54 35.0 2.88e-01 98.6% 31.5%
4934542 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.54 37.0 3.60e-01 100.0% 62.4%
4973776 2008.1.1.16 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.53 34.0 2.72e-01 100.0% 29.3%
3584391 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.53 45.0 4.13e-01 95.7% 75.8%
4375039 3124.1.1.0 ↗ beta sandwiches › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain 0.52 37.0 3.93e-01 95.7% 91.7%
3879829 2007.1.2.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.51 38.0 2.48e-01 80.0% 80.3%
4972924 2008.1.1.16 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.51 32.0 2.76e-01 100.0% 37.4%
3376432 221.1.1.166 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PF26130 0.51 37.0 3.42e-01 100.0% 57.0%
3340540 1.1.17.19 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Nal1_C 0.51 36.0 2.51e-01 77.1% 83.6%
4944002 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.50 42.0 2.93e-01 100.0% 35.7%