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MG592628.1__AUR99281.1__NVP1263B_45__00045

Bact-Vir

MG592628.1__AUR99281.1__NVP1263B_45__00045

Identity

Accession:
MG592628 ↗
Kingdom:
phage

Quality

74.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_1.263.B._10N.286.51.B1

TaxID: 1881273

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-79
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.74 50.0 5.29e-01 100.0% 79.4%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 49.0 5.04e-01 100.0% 75.4%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 47.0 5.03e-01 100.0% 81.0%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 46.0 4.91e-01 100.0% 82.3%
4by6B00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.64 46.0 3.57e-01 100.0% 33.7%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 42.0 4.43e-01 100.0% 76.9%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.63 37.0 4.29e-01 95.8% 85.4%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 45.0 4.68e-01 100.0% 83.3%
4c0dB00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.61 43.0 3.21e-01 100.0% 28.3%
4c0fC00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.59 43.0 3.76e-01 100.0% 50.0%
4qclA01 2.40.50.730 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 44.0 4.17e-01 80.6% 90.7%
2nlkA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.58 45.0 3.07e-01 83.3% 54.6%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 41.0 3.99e-01 100.0% 66.3%
1luiA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.58 34.0 3.06e-01 97.2% 38.0%
2be3B01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.57 44.0 3.61e-01 84.7% 87.4%
4p2iA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 41.0 3.55e-01 77.8% 98.3%
5o46A00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 49.0 4.25e-01 98.6% 78.1%
3vfcA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 40.0 3.18e-01 76.4% 71.1%
3jvaA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 40.0 3.49e-01 77.8% 90.4%
2ia7A00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 41.0 3.59e-01 80.6% 91.9%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.55 47.0 4.25e-01 98.6% 99.0%
2cqaA01 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.54 41.0 4.10e-01 80.6% 91.9%
3mi6A01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.54 47.0 3.11e-01 100.0% 52.1%
1wjjA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 43.0 3.77e-01 88.9% 83.6%
2krtA01 3.10.450.270 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 41.0 3.73e-01 86.1% 94.2%
5egjA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 37.0 2.85e-01 73.6% 77.2%
4r1kB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 45.0 3.70e-01 97.2% 78.7%
2xglA00 3.10.450.300 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › YebF/Colicin-M immunity protein 0.52 44.0 4.13e-01 97.2% 83.5%
4ge6A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.52 40.0 2.65e-01 83.3% 55.4%
2bzlA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.52 40.0 2.69e-01 83.3% 59.5%
1fmbA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.52 40.0 3.61e-01 84.7% 78.8%
7z0sE01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.51 43.0 3.65e-01 93.1% 81.5%
1ul7A00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.51 42.0 3.74e-01 90.3% 73.5%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3826141 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 66.0 6.07e-01 100.0% 73.3%
3703449 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.76 63.0 6.22e-01 100.0% 86.7%
4946993 4.1.1.479 ↗ beta barrels › SH3 › SH3 › SH3 › eIF-5a 0.70 49.0 4.98e-01 100.0% 74.3%
3931897 69.1.2.1 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › AXH › AXH 0.70 51.0 4.25e-01 83.3% 44.8%
3221229 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 41.0 4.88e-01 95.8% 93.3%
3948467 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.68 48.0 5.00e-01 100.0% 81.5%
3483489 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 47.0 4.69e-01 100.0% 69.3%
3952685 4252.1.1.1 ↗ beta barrels › AttH-like › AttH-like › AttH-like › CrtC 0.66 56.0 3.98e-01 95.8% 34.1%
3476615 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 56.0 5.44e-01 100.0% 85.0%
3561094 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.64 50.0 4.93e-01 100.0% 80.0%
3326221 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 51.0 4.66e-01 86.1% 95.8%
4990492 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 41.0 4.79e-01 93.1% 98.0%
3493866 216.1.1.26 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › FmiP_Thoc5 0.62 43.0 3.86e-01 97.2% 50.5%
3750534 2.1.1.257 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30832 0.62 52.0 4.22e-01 93.1% 83.0%
3701675 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.61 41.0 4.21e-01 73.6% 73.5%
4932742 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 47.0 4.03e-01 84.7% 62.5%
4038269 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.61 44.0 4.55e-01 100.0% 84.6%
3650703 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.61 45.0 3.50e-01 79.2% 62.4%
3660107 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.61 45.0 3.66e-01 79.2% 72.9%
4278171 375.1.1.41 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Methyltransf_13 0.60 45.0 4.81e-01 93.1% 98.3%
3918373 4.1.1.60 ↗ beta barrels › SH3 › SH3 › SH3 › YccV-like 0.60 55.0 4.24e-01 100.0% 49.0%
5059830 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.60 49.0 4.60e-01 100.0% 73.3%
4214888 330.3.1.1 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.59 43.0 3.98e-01 81.9% 71.0%
3792203 2.1.1.140 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SURF1 0.57 45.0 3.51e-01 87.5% 86.1%
4076295 375.1.1.88 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ogr_Delta 0.57 34.0 3.75e-01 95.8% 76.4%
None — 0.57 43.0 2.84e-01 81.9% 37.4%
4947833 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 48.0 4.05e-01 95.8% 63.2%
4879658 2005.1.1.21 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Pantoate_ligase 0.57 46.0 4.06e-01 91.7% 99.1%
3861891 330.1.1.26 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_RDM1 0.57 46.0 3.79e-01 90.3% 74.1%
3221233 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 35.0 4.09e-01 93.1% 100.0%
3175320 2007.2.3.21 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase, PTP-SAK 0.56 43.0 2.70e-01 83.3% 47.4%
3931868 243.3.1.1 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.56 47.0 4.24e-01 97.2% 74.3%
5018715 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 36.0 3.86e-01 95.8% 81.7%
3721032 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.55 46.0 3.74e-01 97.2% 84.0%
3240204 243.3.1.1 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.55 47.0 4.08e-01 97.2% 83.5%
4928702 2011.2.1.7 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC2 0.55 42.0 2.98e-01 87.5% 26.7%
5066217 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 46.0 4.31e-01 95.8% 84.9%
5047301 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 42.0 3.95e-01 88.9% 97.8%
3472467 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.53 38.0 3.79e-01 76.4% 86.7%
4934084 2011.2.1.7 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC2 0.53 41.0 2.91e-01 87.5% 26.4%
4999321 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 41.0 3.71e-01 88.9% 95.2%
4140724 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.52 44.0 3.98e-01 98.6% 81.0%
3581632 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.52 46.0 2.97e-01 100.0% 28.5%
3396837 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.52 38.0 3.83e-01 79.2% 84.3%
3266842 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.51 36.0 3.02e-01 73.6% 89.6%
3628355 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.51 37.0 2.50e-01 77.8% 25.4%
3641051 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 47.0 4.24e-01 100.0% 77.9%
3863278 11.1.1.239 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG3 0.51 42.0 3.60e-01 94.4% 79.2%
4159564 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 40.0 3.03e-01 93.1% 99.1%
4314610 4272.1.1.1 ↗ a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.51 42.0 3.15e-01 91.7% 58.7%
3488509 216.1.1.2 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C 0.51 42.0 3.27e-01 98.6% 60.6%
5031847 2011.2.1.7 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC2 0.50 43.0 3.05e-01 95.8% 36.5%