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MG592630.1__AUR99384.1__NVP1265O_05__00005

Bact-Vir

MG592630.1__AUR99384.1__NVP1265O_05__00005

Identity

Accession:
MG592630 ↗
Kingdom:
phage

Quality

93.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 9-67
PDB
CATH (69)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.86 60.0 6.61e-01 100.0% 89.6%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.85 65.0 6.46e-01 100.0% 77.4%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.85 63.0 5.98e-01 100.0% 67.6%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.85 59.0 5.60e-01 100.0% 62.3%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.84 64.0 6.02e-01 100.0% 67.6%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.84 64.0 5.96e-01 100.0% 66.7%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.82 66.0 6.50e-01 100.0% 82.3%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.81 67.0 6.94e-01 100.0% 96.3%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.81 61.0 6.15e-01 100.0% 79.7%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.80 61.0 6.21e-01 100.0% 82.8%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 56.0 5.84e-01 100.0% 83.0%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.74 62.0 6.16e-01 100.0% 87.1%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.74 63.0 6.21e-01 100.0% 87.3%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 62.0 5.87e-01 100.0% 78.6%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.72 67.0 4.82e-01 100.0% 49.0%
4bb7B00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.72 67.0 4.32e-01 100.0% 30.8%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 57.0 5.38e-01 100.0% 71.4%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.71 54.0 5.20e-01 100.0% 72.7%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 59.0 5.95e-01 100.0% 91.7%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.70 52.0 5.15e-01 88.1% 75.4%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.70 65.0 4.73e-01 100.0% 49.3%
2ls0101 2.40.50.670 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Target recognition domain of lytic exoenzyme 0.70 58.0 4.76e-01 94.9% 92.1%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 53.0 5.47e-01 81.4% 91.1%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 61.0 5.87e-01 100.0% 97.0%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 57.0 5.54e-01 100.0% 83.3%
2v1rA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 61.0 5.87e-01 100.0% 89.6%
1ssfA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 49.0 5.02e-01 100.0% 85.5%
5egwA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.66 58.0 3.54e-01 100.0% 21.5%
1u5kA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 45.0 4.13e-01 74.6% 86.6%
7z0kB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 56.0 5.46e-01 100.0% 90.6%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.64 48.0 4.86e-01 100.0% 83.1%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 45.0 3.90e-01 100.0% 49.5%
4me3A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 45.0 3.83e-01 76.3% 88.7%
3h0gH00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 50.0 3.99e-01 91.5% 91.9%
3zfnA02 2.30.140.40 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Pestivirus Npro endopeptidase C53, interaction domain 0.62 42.0 4.33e-01 74.6% 75.4%
2dt4A00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.61 54.0 4.06e-01 100.0% 46.9%
2b4wA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.60 51.0 3.26e-01 94.9% 27.5%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 47.0 4.28e-01 89.8% 91.9%
5h1kB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 51.0 3.22e-01 98.3% 25.1%
3oxhA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.60 43.0 3.53e-01 76.3% 96.5%
3c4bA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 46.0 4.49e-01 96.6% 74.6%
3oxhA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.59 43.0 3.33e-01 78.0% 83.2%
1jb7A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 51.0 4.03e-01 94.9% 75.0%
2wtzA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.59 45.0 3.14e-01 89.8% 82.5%
3b59A02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.58 40.0 3.07e-01 74.6% 76.4%
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 51.0 3.63e-01 100.0% 37.6%
1lomA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.57 34.0 2.96e-01 96.6% 34.7%
2ei0A02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 42.0 3.21e-01 83.1% 82.9%
3a7fA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 43.0 3.78e-01 84.7% 94.6%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 40.0 3.93e-01 81.4% 68.7%
1cboA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 49.0 3.07e-01 98.3% 63.6%
2k49A00 2.30.29.80 Mainly Beta › Roll › PH-domain like › 0.56 43.0 3.64e-01 91.5% 67.8%
6ro0B02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 42.0 3.54e-01 84.7% 86.4%
1hyuA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 46.0 3.32e-01 96.6% 57.1%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.55 44.0 4.20e-01 91.5% 83.1%
3r4qA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 43.0 3.38e-01 88.1% 78.0%
7tzoA01 1.10.1070.11 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain 0.54 45.0 3.26e-01 94.9% 32.8%
3a0oA03 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.54 40.0 2.61e-01 81.4% 61.2%
4hc5D00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 43.0 3.45e-01 91.5% 76.3%
3b59A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 42.0 3.38e-01 88.1% 98.3%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.53 44.0 4.52e-01 94.9% 93.1%
3bqxA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 42.0 3.23e-01 88.1% 71.9%
3dmeA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 42.0 2.98e-01 94.9% 67.6%
2i7rA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 41.0 3.43e-01 89.8% 80.7%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.52 44.0 4.22e-01 91.5% 80.6%
3l20A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 42.0 3.11e-01 88.1% 77.3%
3l8kA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 45.0 3.59e-01 100.0% 97.6%
4n04A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 40.0 3.37e-01 91.5% 82.0%
1jsgA00 2.40.15.10 Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 0.51 42.0 3.53e-01 98.3% 83.8%
ECOD (85)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4605602 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.91 71.0 6.83e-01 100.0% 73.8%
3564972 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.90 72.0 6.70e-01 100.0% 70.0%
3256432 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.90 70.0 7.04e-01 100.0% 81.7%
4208181 4.1.1.70 beta barrels › SH3 › SH3 › SH3 › Tsr0524-like 0.89 80.0 7.73e-01 100.0% 87.7%
4025829 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.88 66.0 6.90e-01 100.0% 85.5%
3701345 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.87 81.0 7.24e-01 100.0% 83.7%
1821014 4.1.1.70 beta barrels › SH3 › SH3 › SH3 › Tsr0524-like 0.87 78.0 7.61e-01 100.0% 89.1%
4241924 4.1.1.93 beta barrels › SH3 › SH3 › SH3 › 40S_S4_C 0.87 65.0 5.60e-01 100.0% 52.2%
4271974 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.87 67.0 6.52e-01 100.0% 75.0%
3660964 4.1.1.6 beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C 0.86 66.0 5.42e-01 100.0% 48.0%
4629735 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.85 67.0 6.48e-01 100.0% 75.4%
3741680 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.85 66.0 6.82e-01 100.0% 87.3%
4501723 4.8.1.45 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Peptidase_U57 0.84 65.0 6.69e-01 100.0% 87.3%
3597255 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.84 65.0 5.64e-01 100.0% 56.5%
3698762 4.1.1.6 beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C 0.84 64.0 5.26e-01 100.0% 46.6%
4300449 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.84 66.0 6.37e-01 100.0% 75.4%
4888987 4.1.1.6 beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C 0.84 64.0 6.08e-01 100.0% 69.6%
5073368 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.83 66.0 6.21e-01 100.0% 71.4%
4964768 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.83 66.0 6.59e-01 100.0% 83.3%
3742938 4.1.1.102 beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.83 67.0 6.48e-01 100.0% 78.5%
3495447 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.83 67.0 5.19e-01 100.0% 42.5%
2675820 4.1.1.93 beta barrels › SH3 › SH3 › SH3 › 40S_S4_C 0.83 63.0 5.39e-01 100.0% 52.7%
3591224 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.82 60.0 6.52e-01 100.0% 92.0%
5022848 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 64.0 6.37e-01 100.0% 81.7%
4931822 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 59.0 5.70e-01 100.0% 69.2%
3830083 4.1.1.12 beta barrels › SH3 › SH3 › SH3 › PWWP 0.81 62.0 4.66e-01 100.0% 35.6%
3930846 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.81 58.0 5.43e-01 83.1% 62.9%
3660358 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 62.0 6.25e-01 100.0% 80.0%
3941152 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.81 59.0 5.69e-01 81.4% 69.2%
3247995 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.81 60.0 5.62e-01 100.0% 65.7%
3404812 4.1.1.12 beta barrels › SH3 › SH3 › SH3 › PWWP 0.80 61.0 4.65e-01 100.0% 36.9%
2464247 4.8.1.2 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.80 57.0 5.49e-01 74.6% 78.8%
4138935 4.1.1.241 beta barrels › SH3 › SH3 › SH3 › NifZ 0.79 72.0 6.64e-01 100.0% 86.7%
5031165 4.1.1.93 beta barrels › SH3 › SH3 › SH3 › 40S_S4_C 0.78 63.0 5.95e-01 100.0% 72.9%
4376886 4.1.1.241 beta barrels › SH3 › SH3 › SH3 › NifZ 0.78 71.0 6.39e-01 100.0% 82.5%
4018365 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 70.0 5.17e-01 100.0% 75.9%
3396897 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.77 68.0 6.64e-01 100.0% 90.5%
4261760 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.77 70.0 5.91e-01 100.0% 71.6%
3798312 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.77 62.0 5.88e-01 100.0% 74.3%
4029199 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 71.0 3.87e-01 100.0% 7.4%
3586469 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.76 62.0 5.38e-01 100.0% 60.0%
3886492 4.1.1.154 beta barrels › SH3 › SH3 › SH3 › DUF4772 0.74 65.0 5.94e-01 100.0% 74.7%
3023952 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 65.0 5.25e-01 100.0% 70.8%
3703749 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 54.0 5.29e-01 100.0% 72.3%
4003181 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.72 65.0 6.53e-01 100.0% 96.7%
3991065 4.1.1.334 beta barrels › SH3 › SH3 › SH3 › SH3_1, SH3_2 0.71 63.0 5.73e-01 100.0% 86.3%
3597789 219.1.1.4 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 0.69 62.0 3.89e-01 100.0% 25.9%
4928794 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 49.0 5.43e-01 91.5% 100.0%
4982354 4.7.1.0 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.68 56.0 5.43e-01 100.0% 83.1%
5048974 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 59.0 4.77e-01 100.0% 51.8%
3612182 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 62.0 5.30e-01 100.0% 92.2%
4027502 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 52.0 5.08e-01 100.0% 78.5%
3707023 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 57.0 4.84e-01 100.0% 75.0%
4557124 4.6.1.6 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.63 55.0 5.17e-01 100.0% 80.0%
3277727 4.8.1.43 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › RNHCP 0.63 54.0 4.62e-01 96.6% 84.2%
3189510 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.62 46.0 4.64e-01 91.5% 78.3%
3717566 5.1.3.28 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.60 51.0 3.36e-01 96.6% 47.9%
3979962 9.1.1.69 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › BigA_N 0.60 44.0 3.94e-01 79.7% 75.3%
1168794 330.1.1.8 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dicer_dsRBD 0.60 46.0 3.98e-01 96.6% 52.6%
3670468 4.1.1.332 beta barrels › SH3 › SH3 › SH3 › Peptidase_C1 0.59 52.0 4.08e-01 100.0% 51.5%
4117297 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 43.0 4.18e-01 100.0% 68.6%
3183430 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.59 45.0 3.06e-01 88.1% 22.3%
4888509 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.58 49.0 3.35e-01 96.6% 61.6%
5039633 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.58 44.0 4.14e-01 93.2% 66.2%
5037599 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.58 51.0 3.22e-01 98.3% 22.8%
4034031 4056.1.1.0 beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.58 47.0 4.60e-01 100.0% 86.2%
4030767 3504.1.1.1 beta barrels › MutM N-terminal domain-like › Hypothetical protein YojF › Hypothetical protein YojF › DUF1806 0.58 49.0 3.99e-01 100.0% 82.5%
4625348 325.1.7.3 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.58 48.0 4.83e-01 94.9% 90.0%
5643 809.2.1.1 a+b two layers › BLIP-like › BT0923-like › BT0923-like › PepSY_like 0.57 46.0 4.40e-01 98.3% 76.1%
4456732 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.57 47.0 4.27e-01 94.9% 67.5%
5011794 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.57 49.0 3.64e-01 100.0% 91.3%
3929340 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.56 50.0 3.76e-01 100.0% 95.2%
3721745 2003.1.3.4 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Lys_Orn_oxgnase 0.56 49.0 2.93e-01 98.3% 34.2%
3929718 5.1.4.12 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.56 49.0 2.90e-01 98.3% 31.9%
3262248 2003.1.2.16 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.56 46.0 2.84e-01 96.6% 39.0%
4129953 325.1.7.3 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.55 46.0 4.45e-01 94.9% 83.1%
3224107 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 47.0 2.82e-01 96.6% 19.1%
4632722 2003.1.2.16 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.54 48.0 3.16e-01 100.0% 54.9%
3613250 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 45.0 2.67e-01 96.6% 43.4%
4139173 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.53 39.0 3.38e-01 81.4% 73.0%
3614740 3794.1.1.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.53 42.0 3.34e-01 91.5% 73.8%
4878518 2003.1.2.6 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like,NAD_binding_8 0.53 47.0 3.52e-01 100.0% 89.8%
4435672 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.52 42.0 4.15e-01 93.2% 86.2%
3619936 5.1.4.12 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.51 43.0 2.60e-01 98.3% 29.3%
4119875 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.51 40.0 3.92e-01 94.9% 81.5%
D2 medium residues 72-108
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3mvpA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.87 72.0 4.71e-01 100.0% 22.8%
1wwiA00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.84 67.0 4.41e-01 100.0% 22.4%
1kl9A02 1.10.150.190 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 0.82 68.0 5.21e-01 100.0% 41.3%
1bh9B00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.82 71.0 5.30e-01 100.0% 40.4%
5cr4A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.80 70.0 4.28e-01 100.0% 75.0%
1eyqA02 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.80 68.0 4.45e-01 100.0% 57.2%
2i5uA00 1.10.10.630 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DnaD domain-like 0.76 63.0 5.09e-01 100.0% 49.4%
2f4lA03 3.10.28.20 Alpha Beta › Roll › Endonuclease I-creI › Acetamidase/Formamidase-like domains 0.75 60.0 4.91e-01 100.0% 65.0%
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 60.0 5.45e-01 100.0% 67.9%
1nrwA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.75 58.0 3.99e-01 94.6% 24.6%
3dd9D02 6.10.140.2060 Special › Helix non-globular › Helix Hairpins › 0.74 61.0 5.98e-01 100.0% 90.2%
2yqzA02 1.10.8.900 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.73 57.0 4.84e-01 91.9% 82.4%
2fu2A00 1.20.1440.50 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like 0.73 57.0 4.37e-01 83.8% 41.0%
1i5nB00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.73 58.0 3.93e-01 86.5% 27.4%
2vxdA00 1.10.10.2100 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Nucleophosmin, C-terminal domain 0.72 51.0 4.72e-01 81.1% 55.6%
3d5lA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 56.0 5.24e-01 100.0% 73.1%
4xxiA00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.70 60.0 3.99e-01 97.3% 25.2%
7kznP01 3.30.740.10 Alpha Beta › 2-Layer Sandwich › Protein Inhibitor Of Neuronal Nitric Oxide Synthase › Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 0.70 52.0 4.00e-01 97.3% 33.3%
2hszA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.69 51.0 4.17e-01 83.8% 98.7%
3s5tA02 3.90.640.20 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › Heat-shock cognate protein, ATPase 0.69 59.0 4.36e-01 100.0% 58.0%
2khmA01 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.69 53.0 4.03e-01 100.0% 35.2%
2oq1A02 1.10.930.10 Mainly Alpha › Orthogonal Bundle › Syk Kinase; Chain A, domain 2 › Syk Kinase; Chain A, domain 2 0.68 53.0 5.18e-01 100.0% 82.2%
8e9gE01 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.68 52.0 4.53e-01 94.6% 52.4%
1j78A05 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.68 50.0 4.56e-01 91.9% 58.3%
1u9pA00 1.10.1220.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like 0.67 57.0 4.27e-01 100.0% 63.5%
3rx6A00 1.20.58.1090 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phage polarity suppression protein monomer 0.66 60.0 3.72e-01 100.0% 41.2%
4b3hA03 1.10.1040.50 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › 0.66 56.0 3.51e-01 100.0% 17.5%
3u9rB02 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.66 55.0 3.36e-01 100.0% 14.8%
1f45B00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.65 56.0 3.85e-01 100.0% 42.9%
4usaA02 1.10.150.120 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain 0.65 53.0 3.86e-01 97.3% 30.3%
3k6hA01 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.65 54.0 3.59e-01 100.0% 51.5%
6dv2G02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.65 55.0 3.50e-01 100.0% 19.6%
3aleA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.64 50.0 3.53e-01 97.3% 42.7%
1icrA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.63 53.0 3.32e-01 97.3% 16.7%
4e12A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.61 51.0 3.28e-01 100.0% 72.0%
3tixB03 3.40.50.11490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 47.0 3.10e-01 86.5% 47.7%
3u62A01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.57 46.0 3.23e-01 94.6% 89.6%
1x4qA01 1.20.1390.10 Mainly Alpha › Up-down Bundle › PWI domain › PWI domain 0.56 44.0 3.74e-01 97.3% 49.3%
1j09A04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.52 38.0 3.66e-01 89.2% 79.2%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3465214 103.4.1.5 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX_2 0.85 73.0 5.72e-01 100.0% 46.3%
3963295 148.1.3.238 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF815 0.82 65.0 5.80e-01 94.6% 61.8%
3930038 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.80 69.0 5.25e-01 100.0% 42.2%
3966804 148.1.3.238 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF815 0.80 63.0 5.49e-01 97.3% 56.7%
3935879 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.79 64.0 4.12e-01 100.0% 21.0%
3580853 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 65.0 5.53e-01 100.0% 56.9%
4286831 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.76 63.0 5.71e-01 100.0% 69.1%
3680206 171.1.1.4 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 0.76 64.0 4.20e-01 100.0% 23.2%
3593005 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.75 62.0 4.72e-01 100.0% 37.9%
3979831 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.75 58.0 5.00e-01 97.3% 52.3%
3743434 3542.1.1.3 alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Peptidase_A22B 0.75 62.0 3.73e-01 100.0% 18.2%
4600245 3640.1.1.1 alpha duplicates or obligate multimers › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain › Spidroin_MaSp 0.75 60.0 4.79e-01 100.0% 43.0%
3758209 103.1.1.14 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_4 0.74 61.0 5.34e-01 100.0% 66.7%
5009434 11.1.1.157 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF3501 0.74 58.0 3.90e-01 91.9% 23.3%
4128053 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.73 62.0 5.52e-01 100.0% 69.1%
3466972 171.1.1.0 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like 0.73 61.0 4.09e-01 100.0% 24.8%
4822045 5000.2.1.1 alpha arrays › Toxins' membrane translocation domains › Diphtheria toxin, middle domain › Diphtheria toxin, middle domain › Diphtheria_T 0.72 60.0 4.10e-01 97.3% 26.8%
4319975 547.1.1.1 alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.72 62.0 4.74e-01 100.0% 42.2%
3924799 2484.1.1.107 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1595 0.71 57.0 3.86e-01 100.0% 25.6%
3235805 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.71 55.0 5.51e-01 100.0% 95.0%
3726085 101.1.2.127 alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.70 53.0 4.38e-01 100.0% 45.9%
3480193 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.69 59.0 3.41e-01 100.0% 82.5%
4264922 210.1.2.8 a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › TANGO2 0.68 58.0 3.41e-01 97.3% 12.7%
5003091 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.68 49.0 4.40e-01 97.3% 51.7%
3322252 4952.1.1.3 alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › DUF1677 0.65 53.0 4.45e-01 100.0% 71.4%
3739404 2004.1.1.30 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.64 56.0 3.35e-01 100.0% 49.8%