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MG592644.1__AUS00508.1__NVP1276O_15__00015

Bact-Vir

MG592644.1__AUS00508.1__NVP1276O_15__00015

Identity

Accession:
MG592644 ↗
Kingdom:
phage

Quality

69.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_1.276.O._10N.286.54.E4

TaxID: 1881277

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-65
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4h4nA00 2.60.40.3750 Mainly Beta › Sandwich › Immunoglobulin-like › 0.75 56.0 5.62e-01 100.0% 79.0%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.71 51.0 4.97e-01 100.0% 69.7%
1o22A00 3.90.1000.10 Alpha Beta › Alpha-Beta Complex › Orphan Protein Tm0875; Chain: A; › Hypothetical protein TM0875 0.70 61.0 4.61e-01 100.0% 100.0%
2qlcA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.68 55.0 4.37e-01 100.0% 43.7%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.68 59.0 5.35e-01 100.0% 95.2%
5kfzA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.67 60.0 4.76e-01 100.0% 54.5%
3rj2X00 2.60.120.1150 Mainly Beta › Sandwich › Jelly Rolls › 0.66 49.0 3.81e-01 100.0% 36.8%
3h1qA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.65 56.0 4.57e-01 98.4% 77.4%
3hvnA01 3.90.840.10 Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain 0.65 58.0 4.15e-01 100.0% 35.5%
1w15A00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.64 53.0 4.15e-01 100.0% 42.4%
1yq2A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 55.0 4.51e-01 100.0% 51.3%
3gzkA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 45.0 4.21e-01 98.4% 58.2%
2vzwB00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.64 46.0 3.49e-01 80.3% 31.5%
2wb7A02 2.60.40.2050 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 51.0 3.83e-01 100.0% 34.8%
7r3eB02 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.64 47.0 3.48e-01 80.3% 29.4%
4g3wA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.63 45.0 3.53e-01 80.3% 34.3%
6cc0A01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.63 47.0 3.49e-01 80.3% 79.9%
3m70A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 42.0 3.54e-01 100.0% 40.6%
2pn5A05 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.62 47.0 4.11e-01 100.0% 53.1%
2bhgA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 44.0 3.90e-01 95.1% 51.1%
1f08B00 3.40.1310.10 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.61 53.0 4.09e-01 100.0% 73.8%
3zoqC00 6.20.250.30 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.61 44.0 4.62e-01 100.0% 88.7%
1jmtA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.61 43.0 3.75e-01 77.0% 57.1%
1ajwA00 2.70.50.30 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › Coagulation Factor XIII, subunit A, domain 1 0.60 52.0 3.98e-01 100.0% 41.4%
3hrgA02 3.30.420.260 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain 0.59 45.0 3.79e-01 96.7% 46.5%
1pfoA01 3.90.840.10 Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain 0.59 47.0 3.48e-01 100.0% 31.1%
4g5aA00 2.60.40.3080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 41.0 3.66e-01 100.0% 47.5%
4oumA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.59 46.0 3.59e-01 96.7% 39.4%
2hpuA02 3.30.70.2050 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 37.0 3.66e-01 98.4% 61.9%
1yd0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.58 48.0 4.29e-01 98.4% 64.0%
5e4bA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 45.0 3.34e-01 88.5% 91.5%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.58 46.0 4.06e-01 100.0% 58.5%
2kw4A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.57 45.0 3.49e-01 90.2% 78.9%
2j3wC00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.56 42.0 3.28e-01 80.3% 74.8%
5troA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.56 40.0 2.59e-01 78.7% 94.4%
1mzkA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.55 50.0 3.94e-01 100.0% 96.7%
2x8kA03 2.60.120.860 Mainly Beta › Sandwich › Jelly Rolls › 0.55 46.0 3.84e-01 95.1% 64.9%
2nmlA00 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.55 47.0 4.10e-01 100.0% 77.0%
2avxA00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.54 39.0 2.96e-01 80.3% 28.7%
4mt1A06 3.30.70.1430 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.53 44.0 3.89e-01 100.0% 100.0%
4cswA01 2.60.120.650 Mainly Beta › Sandwich › Jelly Rolls › Cupin 0.53 40.0 2.91e-01 88.5% 56.1%
3df7A02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.53 41.0 3.17e-01 83.6% 67.2%
2pw9C03 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.52 44.0 3.46e-01 96.7% 50.7%
2e56A00 2.60.40.770 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 43.0 3.40e-01 100.0% 49.3%
1vomA01 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.51 43.0 2.74e-01 96.7% 70.6%
7bjkA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.51 36.0 3.11e-01 80.3% 61.9%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5039097 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.76 60.0 4.95e-01 100.0% 48.2%
185779 3566.1.1.1 ↗ beta sandwiches › hypothetical protein BA_2335 › hypothetical protein BA_2335 › hypothetical protein BA_2335 › BA_2335-like 0.75 56.0 5.63e-01 100.0% 79.0%
2006900 302.4.1.0 ↗ a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.74 57.0 4.79e-01 100.0% 49.0%
3573883 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.72 66.0 5.16e-01 100.0% 51.2%
3218185 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.72 63.0 4.33e-01 100.0% 30.7%
4959201 815.1.1.1 ↗ a+b two layers › Chromosomal protein MC1 › Chromosomal protein MC1 › Chromosomal protein MC1 › MC1 0.70 47.0 4.09e-01 98.4% 45.3%
7035 508.1.1.2 ↗ a+b three layers › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › DUF3855 0.70 61.0 4.61e-01 100.0% 100.0%
3285401 3986.2.1.0 ↗ a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.69 52.0 4.91e-01 100.0% 66.7%
4942818 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.69 61.0 4.68e-01 100.0% 55.7%
4160542 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.66 54.0 5.53e-01 100.0% 96.6%
5043352 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 53.0 4.54e-01 100.0% 54.0%
4654177 1119.1.1.1 ↗ a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW 0.66 51.0 3.46e-01 100.0% 21.6%
4938024 2492.1.1.9 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC 0.66 49.0 4.11e-01 100.0% 43.3%
4180988 1119.1.1.1 ↗ a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW 0.66 49.0 3.36e-01 100.0% 20.9%
5065473 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.65 45.0 3.11e-01 80.3% 20.9%
3241319 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.64 47.0 3.73e-01 100.0% 39.2%
4179371 1119.1.1.1 ↗ a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW 0.64 52.0 3.50e-01 100.0% 22.9%
3993633 2492.1.1.42 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB, MitMem_reg 0.64 52.0 3.65e-01 100.0% 26.5%
5014956 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 53.0 4.07e-01 100.0% 40.0%
4026461 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.63 54.0 4.35e-01 100.0% 52.4%
5079496 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 38.0 3.16e-01 73.8% 32.2%
5061290 2487.1.1.0 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.62 53.0 3.93e-01 100.0% 95.4%
3510118 4076.1.1.0 ↗ a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like 0.62 43.0 4.45e-01 100.0% 81.8%
4033537 1119.1.1.1 ↗ a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW 0.61 49.0 3.40e-01 100.0% 24.3%
3333290 10.32.1.203 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.61 54.0 3.87e-01 100.0% 43.9%
3290047 223.1.1.23 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 0.61 44.0 3.11e-01 78.7% 24.1%
4140256 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.61 43.0 3.13e-01 82.0% 25.6%
4927140 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 52.0 4.51e-01 100.0% 62.1%
3237567 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.61 44.0 4.67e-01 100.0% 85.5%
4290748 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.61 45.0 3.13e-01 80.3% 24.0%
4611376 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.60 44.0 2.75e-01 80.3% 12.7%
3400015 223.2.1.10 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.60 38.0 3.07e-01 78.7% 30.0%
4057352 1119.1.1.1 ↗ a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW 0.60 51.0 3.42e-01 100.0% 55.3%
4355799 223.1.1.26 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_3 0.60 42.0 3.19e-01 80.3% 28.5%
3740347 10.32.1.203 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.60 52.0 3.84e-01 100.0% 78.2%
139190 10.12.1.42 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › DUF1971 0.59 39.0 3.46e-01 100.0% 44.2%
4029586 10.32.1.203 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.59 51.0 3.91e-01 100.0% 51.3%
3493644 10.32.1.203 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.59 51.0 3.81e-01 100.0% 69.7%
5010744 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.59 50.0 4.96e-01 98.4% 98.5%
3167876 223.2.1.9 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Sedlin_N 0.59 44.0 3.21e-01 80.3% 81.7%
3915206 10.32.1.203 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.59 51.0 3.73e-01 100.0% 65.7%
4570660 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.58 40.0 3.14e-01 80.3% 31.0%
3398530 11.1.1.41 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.58 54.0 3.86e-01 100.0% 40.6%
4103289 3435.1.1.3 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › CENP-L 0.58 47.0 3.21e-01 100.0% 24.8%
3959592 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.58 48.0 3.76e-01 100.0% 84.5%
4998374 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 44.0 3.49e-01 80.3% 75.2%
3974768 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 41.0 3.14e-01 80.3% 31.0%
3392258 11.1.1.536 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1091 0.56 45.0 3.58e-01 100.0% 56.8%
4926800 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 48.0 4.07e-01 100.0% 59.0%
3274170 206.1.1.16 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › IucA_IucC,FhuF 0.55 48.0 2.80e-01 100.0% 13.9%
5004080 886.1.1.2 ↗ a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › GyrI-like 0.54 44.0 3.49e-01 95.1% 97.1%
4944314 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 39.0 3.22e-01 80.3% 83.2%
3990833 382.1.1.13 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Ly-6_related 0.53 46.0 4.05e-01 100.0% 80.0%
4002901 223.2.1.12 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › MAPKK1_Int 0.53 39.0 3.05e-01 80.3% 72.1%
3923043 4326.1.1.1 ↗ a+b two layers › ERH-like › ERH-like › ERH-like › ER 0.53 46.0 3.96e-01 100.0% 72.0%
3396683 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.53 45.0 4.21e-01 100.0% 94.9%
4034506 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 38.0 2.95e-01 80.3% 32.3%
3928420 3680.1.1.0 ↗ a+b complex topology › Zinc finger FYVE domain-containing protein 9 C-terminal domain › Zinc finger FYVE domain-containing protein 9 C-terminal domain › Zinc finger FYVE domain-containing protein 9 C-terminal domain 0.52 42.0 3.36e-01 100.0% 82.0%
3451090 3566.1.1.0 ↗ beta sandwiches › hypothetical protein BA_2335 › hypothetical protein BA_2335 › hypothetical protein BA_2335 0.52 47.0 3.98e-01 100.0% 65.3%
5030919 3662.1.1.0 ↗ a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related 0.51 42.0 3.58e-01 100.0% 94.8%
4030677 1116.1.1.0 ↗ a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain 0.50 43.0 3.27e-01 100.0% 40.0%