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MG592644.1__AUS00555.1__NVP1276O_62__00062

Bact-Vir

MG592644.1__AUS00555.1__NVP1276O_62__00062

Identity

Accession:
MG592644 ↗
Kingdom:
phage

Quality

93.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_1.276.O._10N.286.54.E4

TaxID: 1881277

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-57
PDB
Domain cluster: rep: MG592434.1__AUR84322.1__NVP1054O_18__00018__D5-55
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3grzB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.73 52.0 3.57e-01 100.0% 21.2%
2pp6A02 2.40.10.210 Mainly Beta › Beta Barrel › Thrombin, subunit H › Phage tail proteins (gpFII-like) 0.68 51.0 4.88e-01 100.0% 69.8%
3b5mA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 58.0 4.54e-01 100.0% 61.3%
4nzrM03 3.30.110.180 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › 0.65 52.0 3.94e-01 100.0% 37.4%
2dyiA01 2.40.30.60 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM 0.64 47.0 4.12e-01 100.0% 51.2%
6f2mA02 2.40.30.290 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.62 51.0 4.33e-01 100.0% 55.2%
2yx1A01 3.30.70.2580 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 44.0 4.19e-01 100.0% 63.6%
3k6yA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 46.0 3.96e-01 100.0% 48.9%
1xqbA01 2.40.30.70 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › YaeB-like 0.61 52.0 4.20e-01 100.0% 63.3%
5hmaA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 49.0 4.25e-01 100.0% 56.3%
2cxiA01 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.60 48.0 4.23e-01 100.0% 60.8%
2x5kP02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.59 51.0 3.63e-01 100.0% 43.6%
1zysA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 47.0 4.03e-01 100.0% 53.7%
2dylA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 48.0 4.16e-01 100.0% 58.2%
4js8A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 49.0 4.22e-01 100.0% 60.7%
5swiD01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.57 44.0 2.94e-01 88.7% 36.5%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.57 50.0 3.84e-01 100.0% 48.4%
2y7jA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 48.0 4.14e-01 100.0% 65.6%
3sz6A00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 41.0 3.32e-01 100.0% 37.1%
2imlA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 49.0 3.86e-01 100.0% 54.0%
3pcoB06 3.30.70.380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain 0.57 47.0 3.98e-01 100.0% 54.3%
2f2uB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 47.0 3.36e-01 100.0% 29.3%
2f1fA02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.56 38.0 3.50e-01 100.0% 50.0%
2f1lA01 2.40.30.60 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM 0.56 45.0 3.89e-01 100.0% 56.2%
5fqdC01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 43.0 4.19e-01 100.0% 79.7%
2acxA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 45.0 3.95e-01 100.0% 59.3%
2z7rA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 40.0 3.53e-01 100.0% 51.2%
2ynaA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 48.0 4.09e-01 100.0% 71.6%
6bg2A02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 45.0 3.59e-01 100.0% 42.4%
4wksC02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.54 44.0 4.10e-01 100.0% 96.0%
4nfnA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 41.0 4.01e-01 100.0% 76.6%
2b9kA00 2.20.20.70 Mainly Beta › Single Sheet › Anthopleurin-A › 0.54 38.0 3.94e-01 100.0% 87.2%
6fdyU01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 43.0 3.92e-01 100.0% 65.0%
2vz6B01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 43.0 3.85e-01 100.0% 62.7%
1g3pA02 3.90.450.1 Alpha Beta › Alpha-Beta Complex › Minor Coat Protein; domain 2 › Minor Coat Protein; Domain 2 0.53 40.0 3.38e-01 100.0% 46.2%
1x9mA03 3.30.70.370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 44.0 3.15e-01 100.0% 45.5%
2ppqA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 43.0 3.70e-01 100.0% 56.4%
2i8eA01 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 34.0 3.20e-01 100.0% 50.0%
2apoA03 3.30.70.3190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 43.0 3.70e-01 100.0% 58.7%
3kgyA00 3.40.430.10 Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A 0.52 40.0 2.70e-01 86.8% 77.1%
3jr1A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 41.0 3.50e-01 100.0% 51.5%
2q1fA02 1.50.10.100 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase 0.52 40.0 2.42e-01 88.7% 21.3%
2x9aA00 2.30.27.10 Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain 0.52 39.0 3.81e-01 100.0% 75.4%
4q7aC02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 42.0 3.48e-01 100.0% 70.4%
4redB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 42.0 3.72e-01 98.1% 61.9%
4czuA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 41.0 3.63e-01 100.0% 57.6%
4kbxA01 2.40.37.30 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › 0.51 42.0 2.84e-01 94.3% 89.1%
4myjA05 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 40.0 3.60e-01 98.1% 59.1%
2gtiA01 3.30.160.820 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Nsp15 N-terminal domain-like 0.51 38.0 3.63e-01 81.1% 98.4%
3igfA02 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 42.0 3.85e-01 100.0% 85.1%
1dl5A02 3.55.20.10 Alpha Beta › 3-Layer(bab) Sandwich › Protein-l-isoaspartate O-methyltransferase; Chain: A, domain 2 › Protein-L-isoaspartyl O-methyltransferase, C-terminal domain 0.50 40.0 3.20e-01 100.0% 42.2%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3728249 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.71 62.0 4.57e-01 100.0% 77.1%
4956113 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.63 52.0 4.60e-01 100.0% 62.5%
1213522 1.1.13.25 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DTP-pb9_B-dom 0.62 50.0 4.30e-01 100.0% 55.2%
5020511 3338.2.1.0 ↗ a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB 0.62 47.0 3.70e-01 83.0% 38.3%
4974179 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.60 50.0 4.08e-01 100.0% 59.1%
5059044 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 47.0 3.91e-01 100.0% 49.5%
4042679 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.59 49.0 4.25e-01 100.0% 60.0%
4185030 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.59 48.0 4.04e-01 100.0% 52.6%
4395520 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.59 48.0 4.02e-01 100.0% 51.6%
3926227 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.59 48.0 3.04e-01 100.0% 16.4%
4449344 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.59 47.0 4.08e-01 100.0% 55.6%
4985166 298.1.1.7 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Gp_dh_C 0.58 50.0 3.54e-01 100.0% 44.0%
4438946 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.58 48.0 4.21e-01 100.0% 60.0%
4214180 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.58 48.0 4.02e-01 100.0% 52.6%
4051652 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.58 47.0 3.97e-01 100.0% 52.6%
4416787 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.58 47.0 4.01e-01 100.0% 55.6%
4512934 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.57 48.0 2.99e-01 100.0% 37.6%
4381495 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.57 46.0 4.00e-01 100.0% 55.6%
4682440 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.57 47.0 3.96e-01 100.0% 52.6%
4024641 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.57 47.0 3.01e-01 100.0% 17.2%
4055193 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.57 48.0 4.02e-01 100.0% 53.7%
4138546 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.57 46.0 3.98e-01 100.0% 55.6%
3996935 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.57 48.0 3.20e-01 100.0% 22.6%
3270933 223.2.1.1 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.57 47.0 3.77e-01 100.0% 66.4%
4391995 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.57 46.0 4.06e-01 100.0% 58.8%
3416202 327.11.2.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.56 46.0 3.91e-01 100.0% 62.0%
3983246 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.56 45.0 3.82e-01 100.0% 52.6%
3966626 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 45.0 3.92e-01 100.0% 55.6%
3932808 101.1.2.163 ↗ alpha arrays › HTH › HTH › winged helix domain › PMT2_N 0.56 46.0 3.31e-01 100.0% 34.1%
3627410 3447.1.1.1 ↗ alpha bundles › Isoprenylcysteine carboxyl methyltransferase (ICMT) › Isoprenylcysteine carboxyl methyltransferase (ICMT) › Isoprenylcysteine carboxyl methyltransferase (ICMT) › ERG4_ERG24 0.56 38.0 2.65e-01 75.5% 59.1%
3351405 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.56 46.0 2.87e-01 100.0% 15.1%
4270467 2002.1.1.45 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_31_2nd 0.55 46.0 2.86e-01 96.2% 16.4%
4220217 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.55 43.0 3.73e-01 100.0% 52.6%
4662737 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.55 44.0 3.78e-01 100.0% 55.6%
4228321 304.113.1.0 ↗ a+b two layers › Alpha-beta plaits › Alpha subunit of glutamate synthase, insertion domain › Alpha subunit of glutamate synthase, insertion domain 0.54 46.0 3.89e-01 100.0% 57.9%
4592324 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.54 47.0 4.00e-01 100.0% 58.9%
3595847 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.54 44.0 2.70e-01 90.6% 31.1%
3175145 206.1.1.70 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 0.54 44.0 2.72e-01 100.0% 14.2%
4029397 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.54 43.0 2.77e-01 100.0% 15.8%
3964728 304.39.1.1 ↗ a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd 0.54 45.0 3.84e-01 100.0% 57.9%
4208972 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.54 44.0 3.71e-01 100.0% 51.0%
3220363 3447.1.1.1 ↗ alpha bundles › Isoprenylcysteine carboxyl methyltransferase (ICMT) › Isoprenylcysteine carboxyl methyltransferase (ICMT) › Isoprenylcysteine carboxyl methyltransferase (ICMT) › ERG4_ERG24 0.54 38.0 2.65e-01 79.2% 60.0%
3729254 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.53 44.0 2.71e-01 100.0% 28.8%
4008034 223.1.1.113 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PF30408 0.52 43.0 3.17e-01 100.0% 41.8%
3461468 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.52 40.0 3.32e-01 100.0% 43.5%
4405079 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.52 40.0 3.47e-01 100.0% 51.6%
3321373 206.1.1.74 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr 0.51 39.0 2.73e-01 100.0% 21.7%
3597732 2003.1.5.66 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.51 42.0 2.75e-01 100.0% 31.6%
5077903 2003.6.1.4 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › ADP_PFK_GK 0.51 42.0 2.41e-01 90.6% 26.8%
3708059 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.50 42.0 2.65e-01 100.0% 15.6%
4666540 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.50 40.0 3.60e-01 100.0% 61.2%