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MG592650.1__AUS00993.1__NVP1282A_06__00006

Bact-Vir

MG592650.1__AUS00993.1__NVP1282A_06__00006

Identity

Accession:
MG592650 ↗
Kingdom:
phage

Quality

74.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_1.282.A._10N.286.54.F8

TaxID: 1881371

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 9-61
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2riqA02 2.20.25.630 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.73 52.0 5.08e-01 100.0% 68.3%
2qggA02 2.30.30.240 Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain 0.63 53.0 4.66e-01 98.1% 77.1%
2d42A02 3.10.450.380 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 48.0 4.63e-01 100.0% 92.3%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.58 45.0 4.11e-01 100.0% 62.3%
1vhzA01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.58 41.0 2.97e-01 77.4% 64.6%
4wiwA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.58 39.0 3.73e-01 73.6% 60.9%
4gs3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 43.0 3.81e-01 92.5% 92.2%
4ii2A06 3.10.290.60 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › Ubiquitin-activating enzyme E1, UFD domain 0.56 40.0 3.51e-01 83.0% 90.4%
3rriA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 39.0 3.09e-01 77.4% 37.4%
5i4nA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 42.0 3.73e-01 94.3% 90.2%
3d9wA02 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.54 40.0 3.41e-01 86.8% 65.7%
2jzlA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.53 40.0 3.29e-01 86.8% 82.9%
7kx7A03 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 41.0 2.84e-01 88.7% 33.0%
5mu3B00 3.40.50.12050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 36.0 2.62e-01 71.7% 49.1%
2m7oA00 3.10.450.400 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Uncharacterised protein PF15513, DUF4651 0.53 39.0 3.71e-01 88.7% 65.7%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.52 41.0 3.68e-01 100.0% 79.8%
2gexA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 42.0 3.20e-01 98.1% 66.4%
4dzdA02 3.30.70.1210 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 0.51 35.0 2.85e-01 77.4% 53.7%
1w4tA02 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.51 41.0 3.52e-01 100.0% 86.9%
3h9wA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 38.0 3.25e-01 94.3% 81.7%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3765036 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 49.0 5.30e-01 86.8% 97.5%
4590247 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.65 53.0 4.76e-01 98.1% 75.0%
5032251 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 43.0 4.56e-01 88.7% 84.4%
3633088 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 49.0 3.01e-01 92.5% 20.0%
3371185 2.1.1.130 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.60 47.0 3.01e-01 92.5% 16.7%
3965465 375.1.1.130 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_Tnp_IS1 0.60 41.0 4.27e-01 90.6% 84.4%
3337303 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 47.0 4.31e-01 92.5% 70.7%
3355345 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 45.0 4.29e-01 90.6% 68.6%
3612106 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.59 43.0 4.06e-01 90.6% 62.7%
4963204 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.58 45.0 3.26e-01 92.5% 63.8%
3512923 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 43.0 3.28e-01 86.8% 50.7%
3743614 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.56 43.0 4.22e-01 100.0% 81.7%
3591097 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 46.0 3.03e-01 100.0% 48.7%
3839839 4.1.1.84 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_7 0.55 45.0 3.93e-01 100.0% 84.4%
3171521 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.54 37.0 3.81e-01 75.5% 88.0%
3877571 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.53 42.0 3.50e-01 98.1% 76.5%
5030421 2003.1.5.79 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 0.53 43.0 2.71e-01 94.3% 50.9%
3700547 109.4.1.22 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N 0.53 37.0 2.09e-01 94.3% 6.1%
3279044 2.1.1.314 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF27099 0.53 40.0 3.88e-01 90.6% 80.0%
3291526 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.52 41.0 3.03e-01 96.2% 32.6%
3706730 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 42.0 3.81e-01 100.0% 97.5%
5072932 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.51 41.0 4.07e-01 100.0% 91.7%