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MG592653.1__AUS01298.1__NVP1283C_56__00056

Bact-Vir

MG592653.1__AUS01298.1__NVP1283C_56__00056

Identity

Accession:
MG592653 ↗
Kingdom:
phage

Quality

88.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 49-101
PDB
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3puaA01 2.60.120.650 Mainly Beta › Sandwich › Jelly Rolls › Cupin 0.72 58.0 3.65e-01 90.6% 17.5%
4gi3C00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.71 51.0 4.99e-01 83.0% 70.2%
3w20A00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.67 48.0 3.09e-01 81.1% 16.2%
5owvD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 52.0 3.47e-01 96.2% 22.5%
5ja1B00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.63 38.0 3.60e-01 81.1% 47.0%
1u3eM02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 49.0 4.46e-01 83.0% 76.5%
2n17A00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.63 48.0 4.74e-01 88.7% 80.4%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 52.0 4.81e-01 92.5% 89.4%
5o9iA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.61 47.0 3.33e-01 86.8% 94.7%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 50.0 4.64e-01 94.3% 87.9%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 44.0 4.42e-01 83.0% 94.5%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 45.0 4.68e-01 84.9% 100.0%
1iyjB03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 37.0 2.82e-01 81.1% 23.9%
3mb5A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.58 46.0 4.43e-01 90.6% 98.4%
3vk6A01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.58 42.0 4.13e-01 81.1% 76.3%
2jz6A01 2.30.170.40 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L28/L24 0.58 38.0 3.88e-01 77.4% 72.0%
4pytA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.58 50.0 3.84e-01 100.0% 72.7%
1hskA01 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.58 48.0 3.77e-01 100.0% 71.7%
2vpzA05 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.57 47.0 3.47e-01 98.1% 80.5%
3uc1A00 2.120.10.90 Mainly Beta › 6 Propeller › Neuraminidase › DNA gyrase/topoisomerase IV, subunit A, C-terminal 0.57 47.0 3.05e-01 100.0% 87.3%
5ccbA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.56 44.0 4.08e-01 90.6% 88.9%
1i9gA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.56 44.0 4.19e-01 90.6% 98.4%
2xcqA01 3.40.50.670 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 36.0 2.56e-01 77.4% 18.6%
1g25A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.56 41.0 3.90e-01 83.0% 78.5%
3bcwA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 45.0 3.68e-01 100.0% 47.1%
2piaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 45.0 3.79e-01 100.0% 87.5%
1o5uA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 45.0 3.84e-01 100.0% 55.7%
4kncA02 2.60.120.1380 Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module 0.54 48.0 3.73e-01 100.0% 65.0%
4h8wC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 44.0 3.93e-01 90.6% 84.0%
1o54A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.53 42.0 3.93e-01 94.3% 97.2%
6b9tF01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 46.0 3.55e-01 100.0% 68.0%
3l6vA00 2.120.10.90 Mainly Beta › 6 Propeller › Neuraminidase › DNA gyrase/topoisomerase IV, subunit A, C-terminal 0.53 46.0 2.85e-01 96.2% 30.0%
2i45D00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 46.0 3.79e-01 100.0% 68.7%
3ce2A02 1.10.287.830 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › putative peptidase helix hairpin domain like 0.53 38.0 4.02e-01 81.1% 91.5%
1g2rA00 3.30.1230.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › YlxR-like 0.53 37.0 3.15e-01 75.5% 71.3%
2f4nB02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.52 42.0 3.68e-01 100.0% 96.8%
2lgvA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.52 38.0 3.23e-01 83.0% 53.0%
4w8oB00 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.52 39.0 2.40e-01 88.7% 60.3%
1iw4A00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.52 43.0 4.32e-01 98.1% 94.5%
1hpgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 44.0 3.68e-01 100.0% 63.6%
6vtmB00 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 45.0 3.77e-01 100.0% 93.8%
3pm9A02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.52 43.0 3.43e-01 100.0% 81.1%
1t9mA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 39.0 2.64e-01 83.0% 25.0%
3qnfC01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.51 37.0 2.60e-01 81.1% 83.9%
3loiA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 45.0 3.21e-01 100.0% 35.0%
2d93A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 42.0 3.27e-01 100.0% 41.8%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 42.0 3.47e-01 92.5% 74.0%
1fx0B01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.51 42.0 3.82e-01 100.0% 96.2%
3h8hA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 41.0 3.58e-01 98.1% 94.6%
2qhlD00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 40.0 3.38e-01 100.0% 83.5%
6xgqb01 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.50 32.0 2.75e-01 79.2% 34.4%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3415578 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.74 56.0 5.73e-01 86.8% 86.0%
4342241 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.71 57.0 3.47e-01 90.6% 14.9%
3416454 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.69 50.0 5.18e-01 84.9% 82.0%
4286118 10.12.1.9 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC 0.69 55.0 3.44e-01 90.6% 17.8%
146288 4187.2.1.0 a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 0.68 54.0 5.47e-01 100.0% 92.2%
4199672 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.66 41.0 3.40e-01 79.2% 34.7%
4543835 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.65 45.0 3.04e-01 81.1% 18.2%
3386428 2004.1.1.36 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N 0.63 52.0 3.49e-01 96.2% 23.3%
3941506 2002.1.1.16 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase 0.62 43.0 2.62e-01 81.1% 11.6%
5045700 221.1.3.0 a+b two layers › beta-Grasp › Ubiquitin-related › Sulfite oxidase, middle catalytic domain 0.61 51.0 3.77e-01 98.1% 96.7%
4221708 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.61 50.0 4.61e-01 92.5% 90.0%
4174845 148.1.3.203 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF28760 0.60 45.0 3.11e-01 79.2% 53.1%
4982454 284.1.1.0 a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.60 48.0 4.64e-01 90.6% 100.0%
5045701 221.1.3.0 a+b two layers › beta-Grasp › Ubiquitin-related › Sulfite oxidase, middle catalytic domain 0.60 51.0 3.90e-01 100.0% 94.8%
3232582 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 51.0 4.25e-01 98.1% 72.6%
3512155 560.1.1.3 few secondary structure elements › H-NS histone-like proteins, C-terminal domain › H-NS histone-like proteins, C-terminal domain › H-NS histone-like proteins, C-terminal domain › DUF5648 0.59 39.0 3.36e-01 81.1% 38.9%
3738043 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.59 44.0 3.72e-01 83.0% 50.5%
3196969 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.59 44.0 4.11e-01 86.8% 64.3%
3781 4967.1.1.0 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.59 44.0 3.05e-01 81.1% 58.4%
4363284 148.1.3.203 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF28760 0.58 43.0 3.17e-01 79.2% 68.6%
4306152 148.1.3.203 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF28760 0.58 45.0 3.15e-01 81.1% 63.2%
4886012 2007.1.20.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Dehydratase-like › ILVD_EDD 0.58 43.0 2.59e-01 83.0% 25.9%
5013637 221.1.3.1 a+b two layers › beta-Grasp › Ubiquitin-related › Sulfite oxidase, middle catalytic domain › Oxidored_molyb 0.58 47.0 3.50e-01 98.1% 90.9%
3895144 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.58 41.0 3.95e-01 79.2% 70.8%
3690950 217.1.1.2 a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 0.57 49.0 3.90e-01 100.0% 84.3%
2389420 2003.1.2.18 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.57 42.0 2.77e-01 84.9% 30.4%
3783286 376.1.1.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ 0.57 40.0 3.93e-01 79.2% 71.7%
3730011 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.56 46.0 3.53e-01 98.1% 52.9%
4013806 218.2.1.1 a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 0.56 40.0 2.66e-01 77.4% 57.1%
3618240 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.56 41.0 3.49e-01 83.0% 77.0%
4466599 301.6.1.0 a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like 0.56 42.0 2.97e-01 79.2% 54.0%
5023153 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.56 49.0 3.74e-01 100.0% 79.2%
4027862 376.1.1.17 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-rbx1 0.55 41.0 3.67e-01 79.2% 58.7%
4939562 284.1.1.9 a+b two layers › FKBP-like › FKBP-like › FKBP-like › TrmI-like_N 0.55 43.0 4.14e-01 92.5% 98.5%
8227 4232.1.1.1 few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 0.55 40.0 3.68e-01 79.2% 77.1%
4493828 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.55 45.0 2.92e-01 100.0% 31.4%
331943 10.12.1.27 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_3 0.55 45.0 3.52e-01 100.0% 41.2%
3723066 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.55 44.0 3.04e-01 100.0% 24.9%
None 0.54 45.0 2.56e-01 94.3% 15.4%
4999902 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.54 45.0 3.34e-01 96.2% 61.4%
3969466 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.54 43.0 3.38e-01 100.0% 40.0%
3627550 376.1.1.27 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.54 39.0 3.46e-01 79.2% 55.0%
1030895 284.1.1.0 a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.54 41.0 3.91e-01 90.6% 92.6%
1725854 2486.1.1.7 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S41 0.54 42.0 2.77e-01 83.0% 52.9%
3621342 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.53 39.0 3.38e-01 83.0% 82.1%
4082437 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.53 44.0 4.41e-01 96.2% 94.5%
3465043 6108.1.1.0 alpha bundles › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins 0.53 43.0 2.46e-01 94.3% 14.9%
3617714 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.53 37.0 3.46e-01 79.2% 93.3%
3196947 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 45.0 2.60e-01 100.0% 13.0%
4010516 10.12.1.8 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding 0.52 45.0 3.36e-01 100.0% 38.6%
3469360 10.10.1.0 beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) 0.52 41.0 3.60e-01 88.7% 88.7%
3917224 10.12.1.52 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_8 0.51 44.0 2.69e-01 100.0% 31.7%
5051263 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.51 40.0 2.77e-01 98.1% 80.3%
4954389 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.50 43.0 3.17e-01 100.0% 51.3%