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MG592659.1__AUS01756.1__NVP1291O_42__00042

Bact-Vir

MG592659.1__AUS01756.1__NVP1291O_42__00042

Identity

Accession:
MG592659 ↗
Kingdom:
phage

Quality

50.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_1.291.O._10N.286.55.F6

TaxID: 1881283

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 133-254
PDB
Domain cluster: rep: MG592420.1__AUR83526.1__NVP1036O_28__00028__D146-238
D2 medium residues 16-64
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3spdA00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.74 38.0 2.45e-01 100.0% 11.0%
5ar1A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.73 40.0 2.58e-01 100.0% 11.6%
1hc7A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.67 43.0 2.66e-01 77.6% 11.9%
1m2vB03 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.63 35.0 3.28e-01 77.6% 43.5%
4re2A00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.63 52.0 3.02e-01 95.9% 100.0%
2xzm901 6.20.50.180 Special › Other non-globular › N-terminal domain of TfIIb › 0.62 33.0 2.95e-01 98.0% 33.3%
2nutB02 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.62 34.0 3.19e-01 77.6% 43.5%
2auwA01 3.30.2020.10 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › NE0471-like N-terminal domain 0.61 34.0 2.85e-01 91.8% 32.9%
4r27B00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.60 43.0 2.58e-01 79.6% 19.4%
3vkgA07 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 40.0 2.40e-01 89.8% 9.3%
2jieA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.58 48.0 2.83e-01 95.9% 18.9%
3vkhB07 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 38.0 2.66e-01 89.8% 19.0%
1gteA01 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 38.0 2.99e-01 71.4% 86.2%
5okaA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.56 46.0 2.70e-01 95.9% 19.3%
1pbgA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.56 45.0 2.70e-01 95.9% 18.3%
3w6kC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 35.0 3.03e-01 73.5% 36.8%
8d3mA02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.54 35.0 2.24e-01 77.6% 13.8%
4b3lA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.54 44.0 2.64e-01 98.0% 18.9%
2wnwA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.54 38.0 2.41e-01 79.6% 24.2%
1gu2A00 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.53 39.0 2.97e-01 91.8% 32.3%
1cjaA02 1.10.1070.11 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain 0.53 39.0 2.64e-01 79.6% 39.0%
1tvzA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.51 38.0 2.78e-01 83.7% 28.6%
6qv4A04 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 36.0 2.52e-01 79.6% 80.2%
1iq8A03 3.10.450.90 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › ArcTGT, C2 domain 0.50 32.0 2.89e-01 71.4% 43.2%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3357520 310.2.1.28 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › Myb_DNA-bind_3 0.75 38.0 3.15e-01 95.9% 27.1%
5073392 606.1.1.0 ↗ alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.72 38.0 3.08e-01 100.0% 26.3%
4933539 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.67 38.0 2.46e-01 100.0% 11.6%
3445259 2002.1.1.12 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_1 0.60 50.0 3.26e-01 98.0% 33.9%
3375437 2002.1.1.12 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_1 0.59 50.0 2.93e-01 100.0% 16.6%
4884696 2002.1.1.12 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_1 0.58 42.0 2.54e-01 79.6% 20.3%
3349754 2002.1.1.12 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_1 0.58 48.0 2.81e-01 100.0% 16.0%
4962086 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.57 33.0 3.57e-01 83.7% 57.5%
5011867 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.56 36.0 2.44e-01 100.0% 19.0%
3989130 2002.1.1.12 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_1 0.56 45.0 2.66e-01 95.9% 18.3%
None — 0.55 45.0 2.65e-01 95.9% 18.7%
3689283 376.1.1.37 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C 0.55 40.0 3.20e-01 77.6% 41.9%
4945028 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.54 32.0 2.83e-01 77.6% 36.5%
3686177 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.54 35.0 3.30e-01 83.7% 55.0%
5056529 243.6.1.9 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 0.54 34.0 2.54e-01 73.5% 22.9%
3233807 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.53 39.0 3.57e-01 81.6% 74.3%
4016754 386.1.1.46 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf_C2H2_13 0.53 37.0 3.85e-01 75.5% 95.6%
3498926 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.53 29.0 3.36e-01 85.7% 77.1%
5074999 2002.1.1.12 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_1 0.52 40.0 2.37e-01 89.8% 17.5%
4943069 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 37.0 2.66e-01 75.5% 90.0%
5031811 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 32.0 3.34e-01 89.8% 66.7%
5005258 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.51 38.0 2.51e-01 79.6% 93.2%
3486767 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.51 31.0 3.48e-01 98.0% 77.5%
3937568 376.1.1.37 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C 0.51 36.0 3.03e-01 77.6% 43.5%
3738593 376.1.1.37 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C 0.51 37.0 3.27e-01 83.7% 52.0%
3190402 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.50 35.0 2.49e-01 73.5% 51.4%
3849004 101.1.1.273 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PF26094 0.50 36.0 2.73e-01 77.6% 66.2%
4428918 376.1.1.37 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C 0.50 36.0 3.33e-01 83.7% 58.5%
D3 medium residues 69-126
PDB
Domain cluster: rep: MG592459.1__AUR86380.1__NVP1084O_173__00173__D69-126
D4 medium residues 302-494
PDB
D5 medium residues 495-549
PDB
D6 medium residues 550-704
PDB