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MG592664.1__AUS02094.1__NVP2095A_13__00013
Bact-VirMG592664.1__AUS02094.1__NVP2095A_13__00013
Identity
- Accession:
- MG592664 ↗
- Kingdom:
- phage
Quality
91.9
mean pLDDT
Taxonomy
TaxID: 1881403
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-72
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7e4nA01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.67 | 49.0 | 3.29e-01 | 77.5% | 96.8% |
| 4neoA00 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.65 | 51.0 | 4.86e-01 | 84.5% | 94.0% |
| 1zp2A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.64 | 46.0 | 4.00e-01 | 76.1% | 92.9% |
| 2i7uA00 | 6.10.250.1010 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.62 | 40.0 | 4.24e-01 | 87.3% | 74.2% |
| 2oxlA00 | 1.20.5.5260 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.61 | 38.0 | 4.05e-01 | 73.2% | 72.6% |
| 7b7tA01 | 1.20.1270.30 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.60 | 55.0 | 4.16e-01 | 100.0% | 96.9% |
| 2icwG02 | 1.10.10.530 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › mam-mhc complex, Chain D, Domain 2 | 0.60 | 38.0 | 3.58e-01 | 78.9% | 51.7% |
| 3e4bA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.59 | 47.0 | 2.95e-01 | 87.3% | 89.6% |
| 1w0bA01 | 1.20.58.420 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP | 0.59 | 40.0 | 3.62e-01 | 85.9% | 53.3% |
| 3zheA02 | 1.25.40.760 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.59 | 44.0 | 3.10e-01 | 78.9% | 33.8% |
| 4bj1A01 | 1.20.120.1650 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.58 | 34.0 | 2.87e-01 | 87.3% | 36.3% |
| 2zcxA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.58 | 42.0 | 3.02e-01 | 76.1% | 55.6% |
| 1hjrA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.58 | 50.0 | 3.94e-01 | 100.0% | 72.2% |
| 1cpqA00 | 1.20.120.10 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 | 0.58 | 43.0 | 3.53e-01 | 78.9% | 87.6% |
| 1m6nA04 | 1.10.3060.10 | Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.58 | 41.0 | 3.28e-01 | 84.5% | 38.5% |
| 2w02B01 | 1.10.150.640 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle | 0.57 | 44.0 | 4.34e-01 | 81.7% | 77.0% |
| 3vouB00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.57 | 46.0 | 3.71e-01 | 98.6% | 45.6% |
| 1dxrL02 | 1.20.85.10 | Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like | 0.57 | 43.0 | 3.73e-01 | 80.3% | 54.6% |
| 1x42A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.56 | 38.0 | 3.65e-01 | 70.4% | 91.6% |
| 3fhnA01 | 6.10.280.210 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain A | 0.55 | 49.0 | 3.58e-01 | 97.2% | 69.6% |
| 3c1dA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 29.0 | 3.44e-01 | 74.6% | 78.3% |
| 6a3kA00 | 1.20.120.10 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 | 0.54 | 41.0 | 3.38e-01 | 81.7% | 97.7% |
| 7e84A03 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.54 | 48.0 | 3.96e-01 | 97.2% | 56.1% |
| 2i0mA01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.54 | 42.0 | 3.70e-01 | 84.5% | 81.1% |
| 3nb2A02 | 1.25.40.300 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Putative secreted effector protein | 0.54 | 37.0 | 2.90e-01 | 71.8% | 73.5% |
| 3sz7A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.53 | 36.0 | 2.86e-01 | 70.4% | 67.5% |
| 4c9bB00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.53 | 40.0 | 2.64e-01 | 80.3% | 93.1% |
| 3cxbA03 | 1.10.1740.30 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain | 0.53 | 45.0 | 4.35e-01 | 94.4% | 87.7% |
| 2k3nA00 | 1.10.274.60 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain | 0.53 | 43.0 | 3.30e-01 | 88.7% | 55.6% |
| 3ilkA02 | 1.10.8.590 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.52 | 41.0 | 4.25e-01 | 94.4% | 92.6% |
| 3clkB01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 38.0 | 3.24e-01 | 80.3% | 76.2% |
| 1s35A02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 47.0 | 4.02e-01 | 100.0% | 90.0% |
| 2klqA00 | 1.20.58.870 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.50 | 41.0 | 3.43e-01 | 88.7% | 53.5% |
| 3t0yA01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.50 | 36.0 | 3.76e-01 | 81.7% | 81.8% |
| 1rm6B02 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.50 | 35.0 | 3.09e-01 | 71.8% | 91.6% |
ECOD (49)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5065515 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.72 | 63.0 | 5.70e-01 | 95.8% | 93.7% |
| 4544593 | 7078.1.1.0 ↗ | alpha superhelices › C-terminal domain of SidJ › C-terminal domain of SidJ › C-terminal domain of SidJ | 0.72 | 53.0 | 4.47e-01 | 77.5% | 75.7% |
| 4975992 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.72 | 59.0 | 5.45e-01 | 93.0% | 92.6% |
| 4978135 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.71 | 53.0 | 4.15e-01 | 78.9% | 64.1% |
| 4975282 | 545.1.2.0 ↗ | alpha bundles › Gametocyte protein Pfg27-related › Gametocyte protein Pfg27-related › Sporozoite protein UIS3 soluble domain | 0.71 | 43.0 | 4.18e-01 | 83.1% | 55.0% |
| 3954413 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.71 | 61.0 | 5.67e-01 | 97.2% | 90.0% |
| 3284468 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.69 | 60.0 | 5.60e-01 | 97.2% | 89.8% |
| 3935114 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 50.0 | 4.15e-01 | 81.7% | 45.0% |
| 5017110 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.68 | 55.0 | 5.28e-01 | 87.3% | 100.0% |
| 5073394 | 148.1.3.20 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_2 | 0.68 | 38.0 | 3.55e-01 | 84.5% | 43.3% |
| 4526133 | 2003.1.2.21 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Trp_halogenase | 0.67 | 43.0 | 2.59e-01 | 84.5% | 10.9% |
| 3482403 | 101.11.1.8 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › UBN_AB | 0.66 | 38.0 | 3.88e-01 | 77.5% | 58.6% |
| 3386925 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.66 | 50.0 | 3.97e-01 | 80.3% | 45.7% |
| 3236724 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 44.0 | 3.88e-01 | 88.7% | 46.7% |
| 3728304 | 604.12.1.24 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › DUF6604 | 0.65 | 56.0 | 4.98e-01 | 94.4% | 98.0% |
| 4963971 | 601.7.1.34 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › DUF4129 | 0.65 | 55.0 | 5.08e-01 | 93.0% | 92.2% |
| 4975514 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.64 | 36.0 | 3.49e-01 | 77.5% | 50.0% |
| 3452645 | 101.35.1.31 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › Gliadin | 0.64 | 39.0 | 3.52e-01 | 85.9% | 46.3% |
| 4938202 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.64 | 54.0 | 4.81e-01 | 97.2% | 92.4% |
| 3973441 | 606.1.1.0 ↗ | alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain | 0.64 | 54.0 | 5.00e-01 | 93.0% | 80.0% |
| 4662971 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.63 | 47.0 | 3.75e-01 | 80.3% | 44.1% |
| 4045490 | 606.1.1.0 ↗ | alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain | 0.63 | 53.0 | 4.81e-01 | 91.5% | 70.5% |
| 3726085 | 101.1.2.127 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 | 0.62 | 39.0 | 3.74e-01 | 97.2% | 54.1% |
| 3273448 | 593.1.1.1 ↗ | alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 | 0.60 | 43.0 | 2.90e-01 | 90.1% | 21.4% |
| 3527488 | 604.5.1.0 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) | 0.60 | 49.0 | 3.65e-01 | 93.0% | 45.3% |
| 3952621 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.59 | 33.0 | 3.43e-01 | 81.7% | 56.5% |
| 3900656 | 3831.1.1.6 ↗ | alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › POF1B_HlH | 0.59 | 53.0 | 5.00e-01 | 100.0% | 100.0% |
| 3965168 | 601.7.1.6 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › GlnD_UR_UTase | 0.58 | 50.0 | 3.85e-01 | 100.0% | 72.6% |
| 3805676 | 1128.1.1.13 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › PF30094 | 0.58 | 52.0 | 4.82e-01 | 98.6% | 80.0% |
| 4998820 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.58 | 45.0 | 3.08e-01 | 84.5% | 25.2% |
| 4995476 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.58 | 49.0 | 4.33e-01 | 93.0% | 65.0% |
| 3718287 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 43.0 | 3.20e-01 | 78.9% | 45.1% |
| 5013034 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.57 | 46.0 | 4.22e-01 | 88.7% | 67.8% |
| 3434427 | 2484.1.1.165 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.57 | 48.0 | 2.94e-01 | 98.6% | 14.6% |
| 3593195 | 110.1.1.0 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain | 0.56 | 42.0 | 4.02e-01 | 84.5% | 67.1% |
| 5043733 | 7583.1.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like domain in AF1104-like proteins › Rossmann-like domain in AF1104-like proteins › Rossmann-like domain in AF1104-like proteins › ARMT1-like_dom | 0.56 | 38.0 | 2.71e-01 | 87.3% | 23.3% |
| 3993135 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.56 | 49.0 | 3.58e-01 | 97.2% | 88.2% |
| 3926773 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.56 | 39.0 | 3.54e-01 | 76.1% | 53.7% |
| 3600974 | 1128.1.1.0 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein | 0.56 | 51.0 | 4.23e-01 | 100.0% | 65.8% |
| 3687243 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 38.0 | 3.89e-01 | 70.4% | 82.9% |
| 3515925 | 109.4.1.446 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MOR2-PAG1_mid | 0.56 | 42.0 | 2.62e-01 | 81.7% | 33.4% |
| 4028403 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 50.0 | 3.13e-01 | 100.0% | 41.4% |
| 4935180 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.55 | 44.0 | 3.86e-01 | 84.5% | 67.0% |
| 4107533 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.54 | 40.0 | 3.39e-01 | 81.7% | 80.8% |
| 5025722 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 37.0 | 3.21e-01 | 73.2% | 78.2% |
| 3801591 | 524.1.1.0 ↗ | alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p | 0.52 | 41.0 | 3.61e-01 | 84.5% | 81.9% |
| 2833148 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.52 | 45.0 | 3.81e-01 | 94.4% | 63.5% |
| 3589751 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.52 | 41.0 | 3.28e-01 | 87.3% | 77.2% |
| 4025289 | 192.29.1.197 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF4110 | 0.50 | 40.0 | 3.80e-01 | 85.9% | 87.1% |
D2
high
residues 82-151
Domain cluster:
rep: SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00088__D33-109
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01844.30 best | HNH | 44.6 | 1.80e-11 | 65.7% | 89.4% |