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MG592671.1__AUS02627.1__NVP2275O_046__00046

Bact-Vir

MG592671.1__AUS02627.1__NVP2275O_046__00046

Identity

Accession:
MG592671 ↗
Kingdom:
phage

Quality

82.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-82
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02617.23 best ClpS 64.8 6.80e-18 98.7% 85.0%
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1lzwA00 3.30.1390.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS 0.97 93.0 8.60e-01 100.0% 83.5%
4yjmC00 3.30.1390.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS 0.93 87.0 8.46e-01 100.0% 91.6%
1ctfA00 3.30.1390.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS 0.83 67.0 7.06e-01 100.0% 97.1%
3oc2A01 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.78 64.0 4.87e-01 100.0% 39.3%
1rp5A03 3.30.70.2110 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.73 65.0 6.20e-01 100.0% 98.9%
7o49B01 3.30.70.2110 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.69 61.0 5.81e-01 100.0% 91.2%
2kl8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.68 60.0 5.84e-01 100.0% 89.4%
2l48A00 3.30.70.2030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 53.0 5.13e-01 100.0% 76.5%
3p96A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.66 59.0 5.71e-01 100.0% 92.9%
3um7A03 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.66 50.0 4.48e-01 84.2% 59.2%
5ejdA00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.65 49.0 4.93e-01 89.5% 81.3%
7rd0A01 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.65 52.0 4.26e-01 100.0% 45.2%
4bjqA00 1.10.150.770 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.65 50.0 4.98e-01 89.5% 82.1%
2r7rA04 3.30.70.2480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 55.0 4.40e-01 100.0% 68.2%
5wm1A02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.63 55.0 4.90e-01 100.0% 75.2%
1ez0B01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.62 52.0 3.47e-01 93.4% 53.5%
3vouB00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.62 45.0 3.70e-01 88.2% 42.6%
5cbgA00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.62 43.0 3.94e-01 85.5% 53.9%
3cedA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.60 53.0 4.92e-01 100.0% 82.7%
1z2iA01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.60 47.0 4.40e-01 84.2% 100.0%
2damA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.60 39.0 4.17e-01 85.5% 76.1%
3d8lA00 1.10.8.940 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein, phage p2 ORF12 0.60 39.0 3.70e-01 80.3% 54.9%
2vqeM01 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.59 41.0 4.27e-01 92.1% 78.9%
2hg2A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.59 51.0 3.40e-01 93.4% 53.5%
3rh9A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.59 49.0 3.33e-01 93.4% 52.6%
1ab8A00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.57 48.0 3.81e-01 100.0% 62.1%
1on2A02 1.10.60.10 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Iron dependent repressor, metal binding and dimerisation domain 0.57 38.0 4.10e-01 90.8% 82.5%
1r6yA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 48.0 4.42e-01 100.0% 95.1%
4gbmA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 46.0 3.11e-01 89.5% 29.3%
4hacA02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.56 48.0 4.14e-01 100.0% 100.0%
6dkuA01 1.10.8.950 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Filoviridae VP35, C-terminal inhibitory domain, helical subdomain 0.54 39.0 4.04e-01 97.4% 79.5%
1iokA02 3.30.260.10 Alpha Beta › 2-Layer Sandwich › GROEL; domain 2 › TCP-1-like chaperonin intermediate domain 0.53 42.0 3.95e-01 85.5% 98.9%
3n00A00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.53 40.0 3.09e-01 82.9% 69.0%
5j6bD01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.53 43.0 2.98e-01 93.4% 54.4%
4uqwB00 1.10.1780.10 Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain 0.51 37.0 3.10e-01 81.6% 76.4%
2hpsA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.51 42.0 3.33e-01 98.7% 85.3%
7zhgO01 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.51 38.0 4.05e-01 86.8% 95.5%
1u0mA01 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.50 42.0 3.19e-01 96.1% 93.6%
2h84A01 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.50 43.0 3.15e-01 97.4% 89.8%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4595959 308.1.1.0 a+b two layers › ClpS-like › ClpS-related › ClpS-related 0.98 94.0 9.23e-01 100.0% 95.0%
3838034 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.98 94.0 8.75e-01 100.0% 84.4%
4398897 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.98 94.0 8.44e-01 100.0% 77.6%
435725 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.98 94.0 8.20e-01 100.0% 72.4%
4660026 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.95 90.0 8.33e-01 100.0% 81.7%
4028279 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.93 83.0 7.00e-01 100.0% 61.7%
4044190 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.93 81.0 7.42e-01 100.0% 73.7%
4017933 308.1.1.0 a+b two layers › ClpS-like › ClpS-related › ClpS-related 0.92 82.0 7.17e-01 100.0% 67.6%
4182238 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.92 81.0 7.79e-01 100.0% 83.5%
3787090 308.1.1.0 a+b two layers › ClpS-like › ClpS-related › ClpS-related 0.92 82.0 7.04e-01 100.0% 64.5%
4441776 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.91 82.0 7.97e-01 100.0% 86.7%
4320117 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.91 81.0 7.62e-01 100.0% 80.7%
3503894 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.91 85.0 8.38e-01 100.0% 96.2%
4547531 308.1.1.0 a+b two layers › ClpS-like › ClpS-related › ClpS-related 0.91 80.0 7.69e-01 100.0% 83.5%
3791732 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.90 85.0 7.34e-01 100.0% 75.5%
3196937 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.90 80.0 7.49e-01 100.0% 78.9%
3406728 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.90 85.0 7.93e-01 100.0% 94.4%
3740127 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.89 80.0 7.86e-01 100.0% 90.0%
3739074 308.1.1.0 a+b two layers › ClpS-like › ClpS-related › ClpS-related 0.89 80.0 7.83e-01 100.0% 90.0%
3782919 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.89 78.0 7.34e-01 100.0% 78.9%
3540525 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.89 83.0 8.13e-01 100.0% 96.2%
4025747 308.1.1.0 a+b two layers › ClpS-like › ClpS-related › ClpS-related 0.87 77.0 7.63e-01 100.0% 91.3%
3178235 308.1.1.0 a+b two layers › ClpS-like › ClpS-related › ClpS-related 0.86 77.0 7.27e-01 100.0% 81.1%
4064694 308.1.1.0 a+b two layers › ClpS-like › ClpS-related › ClpS-related 0.84 72.0 5.88e-01 100.0% 51.9%
3167139 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.84 72.0 6.49e-01 100.0% 70.0%
4162668 308.1.1.1 a+b two layers › ClpS-like › ClpS-related › ClpS-related › Ribosomal_L12 0.82 67.0 6.36e-01 100.0% 75.3%
4479433 308.1.1.1 a+b two layers › ClpS-like › ClpS-related › ClpS-related › Ribosomal_L12 0.81 66.0 6.50e-01 100.0% 82.5%
4643549 308.1.1.0 a+b two layers › ClpS-like › ClpS-related › ClpS-related 0.81 69.0 6.94e-01 100.0% 92.0%
3594075 308.1.1.0 a+b two layers › ClpS-like › ClpS-related › ClpS-related 0.80 65.0 6.46e-01 100.0% 83.7%
4023942 308.1.1.1 a+b two layers › ClpS-like › ClpS-related › ClpS-related › Ribosomal_L12 0.77 62.0 6.16e-01 100.0% 83.7%
2755152 308.2.1.0 a+b two layers › ClpS-like › Penicillin binding protein ClpS-like domain › Penicillin binding protein ClpS-like domain 0.76 62.0 6.37e-01 100.0% 94.4%
2834309 308.2.1.0 a+b two layers › ClpS-like › Penicillin binding protein ClpS-like domain › Penicillin binding protein ClpS-like domain 0.74 62.0 6.40e-01 100.0% 98.6%
3971161 308.2.1.0 a+b two layers › ClpS-like › Penicillin binding protein ClpS-like domain › Penicillin binding protein ClpS-like domain 0.74 61.0 6.28e-01 98.7% 97.1%
1610574 308.2.1.0 a+b two layers › ClpS-like › Penicillin binding protein ClpS-like domain › Penicillin binding protein ClpS-like domain 0.73 65.0 6.03e-01 100.0% 93.7%
4614734 308.2.1.0 a+b two layers › ClpS-like › Penicillin binding protein ClpS-like domain › Penicillin binding protein ClpS-like domain 0.72 62.0 6.25e-01 100.0% 96.0%
3280312 308.2.1.0 a+b two layers › ClpS-like › Penicillin binding protein ClpS-like domain › Penicillin binding protein ClpS-like domain 0.69 59.0 5.98e-01 100.0% 98.7%
3587994 3962.1.1.0 alpha arrays › N-terminal helical domain in restriction-modification system methylation subunit-like › N-terminal helical domain in restriction-modification system methylation subunit › N-terminal helical domain in restriction-modification system methylation subunit 0.69 49.0 5.12e-01 85.5% 80.0%
4006524 308.2.1.0 a+b two layers › ClpS-like › Penicillin binding protein ClpS-like domain › Penicillin binding protein ClpS-like domain 0.68 59.0 5.82e-01 100.0% 92.5%
3165775 308.2.1.0 a+b two layers › ClpS-like › Penicillin binding protein ClpS-like domain › Penicillin binding protein ClpS-like domain 0.68 56.0 5.84e-01 96.1% 100.0%
4938368 304.1.1.1 a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C 0.67 60.0 4.78e-01 100.0% 91.3%
3886132 194.1.1.1 alpha complex topology › Serum albumin-like › Serum albumin-like › Serum albumin-like › Serum_albumin 0.67 54.0 3.76e-01 88.2% 92.0%
4956905 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.66 45.0 4.51e-01 71.1% 98.8%
2712025 308.2.1.0 a+b two layers › ClpS-like › Penicillin binding protein ClpS-like domain › Penicillin binding protein ClpS-like domain 0.66 55.0 5.60e-01 100.0% 97.3%
5054544 5054.1.1.0 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.66 45.0 4.27e-01 86.8% 60.0%
4935021 4953.1.1.4 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.65 50.0 4.76e-01 82.9% 92.2%
3980369 304.15.1.0 a+b two layers › Alpha-beta plaits › Viral DNA-binding domain › Viral DNA-binding domain 0.65 56.0 5.13e-01 100.0% 100.0%
5022467 5054.1.1.8 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.65 46.0 4.17e-01 86.8% 55.0%
5057879 5054.1.1.8 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.64 46.0 3.90e-01 86.8% 46.7%
4994067 5054.1.1.8 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.64 44.0 4.00e-01 86.8% 54.0%
4037710 304.48.1.39 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › MatK_N 0.62 54.0 3.64e-01 100.0% 56.3%
3578583 304.1.1.1 a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C 0.61 54.0 3.99e-01 98.7% 98.0%
1866912 5054.1.1.8 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.61 43.0 3.91e-01 85.5% 53.9%
119326 3073.1.1.1 alpha arrays › ORF12 from Lactococcus lactis phage p2 › ORF12 from Lactococcus lactis phage p2 › ORF12 from Lactococcus lactis phage p2 › Phage_p2_ORF12 0.60 39.0 3.70e-01 80.3% 54.9%
4561443 101.1.9.8 alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.57 41.0 4.43e-01 92.1% 96.7%
5051504 103.2.1.0 alpha arrays › RuvA-C › ATP cone › ATP cone 0.57 45.0 4.54e-01 90.8% 84.0%
3171510 304.1.1.0 a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain 0.57 49.0 3.74e-01 100.0% 87.9%
5044307 103.2.1.0 alpha arrays › RuvA-C › ATP cone › ATP cone 0.57 45.0 4.32e-01 92.1% 74.1%
5051773 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.56 39.0 3.78e-01 73.7% 95.6%
4499750 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.55 38.0 2.72e-01 73.7% 44.2%
4932763 103.2.1.0 alpha arrays › RuvA-C › ATP cone › ATP cone 0.54 46.0 4.52e-01 90.8% 98.8%
4947212 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.53 46.0 4.23e-01 96.1% 88.0%
4675723 3290.1.1.1 alpha complex topology › Cytosolic helical domain in ferrous iron transport protein B › Cytosolic helical domain in ferrous iron transport protein B › Cytosolic helical domain in ferrous iron transport protein B › FeoB_Cyto 0.52 39.0 3.63e-01 81.6% 71.0%
3796793 108.1.1.26 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5 0.50 41.0 4.06e-01 90.8% 87.5%
1516006 7581.1.1.4 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Chal_sti_synt_N 0.50 43.0 3.15e-01 97.4% 89.8%