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MG592671.1__AUS02639.1__NVP2275O_058__00058

Bact-Vir

MG592671.1__AUS02639.1__NVP2275O_058__00058

Identity

Accession:
MG592671 ↗
Kingdom:
phage

Quality

69.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_2.275.O._10N.286.54.E11

TaxID: 1881285

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-96
PDB
D2 high residues 142-218
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.77 54.0 5.49e-01 98.7% 74.0%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 51.0 5.28e-01 83.1% 83.3%
3pfsB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 58.0 4.81e-01 98.7% 83.1%
2wbfX00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.63 51.0 3.51e-01 88.3% 33.6%
1gd5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.62 42.0 3.52e-01 70.1% 74.6%
2h1eA02 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 39.0 4.51e-01 71.4% 94.5%
3rd4B00 2.40.50.660 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 43.0 4.26e-01 76.6% 100.0%
1pfsA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 41.0 4.18e-01 74.0% 100.0%
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.59 44.0 4.65e-01 81.8% 91.2%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.58 43.0 4.14e-01 92.2% 67.7%
3ik4B01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 41.0 3.64e-01 80.5% 63.6%
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.55 41.0 3.44e-01 79.2% 73.5%
2k5vA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 40.0 3.78e-01 79.2% 89.8%
7kx7A03 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.55 40.0 2.93e-01 76.6% 83.3%
8aa9A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 43.0 3.86e-01 90.9% 91.2%
3toyA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 40.0 3.44e-01 80.5% 56.7%
4bgjA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 41.0 3.58e-01 83.1% 82.2%
1h6hA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 39.0 3.29e-01 80.5% 73.4%
3ugvA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 39.0 3.44e-01 81.8% 51.6%
3n91A02 2.40.128.420 Mainly Beta › Beta Barrel › Lipocalin › 0.53 38.0 3.25e-01 77.9% 65.4%
2pmqA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 38.0 3.33e-01 80.5% 55.8%
1olzA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 38.0 2.40e-01 79.2% 35.8%
3er7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 37.0 3.31e-01 79.2% 85.4%
3h51A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 37.0 3.15e-01 79.2% 76.1%
3nqzA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 37.0 3.69e-01 79.2% 78.6%
2nlkA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.51 36.0 2.58e-01 75.3% 51.5%
3f14A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 36.0 3.24e-01 75.3% 81.2%
2iw3A05 2.40.50.990 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 38.0 3.50e-01 83.1% 60.6%
7a6pB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 31.0 2.59e-01 100.0% 34.1%
4owwB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 41.0 3.75e-01 93.5% 89.7%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4961818 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.95 77.0 7.87e-01 100.0% 86.7%
4963445 4.1.1.162 ↗ beta barrels › SH3 › SH3 › SH3 › DUF502 0.89 82.0 7.94e-01 100.0% 88.2%
4993118 4.1.1.162 ↗ beta barrels › SH3 › SH3 › SH3 › DUF502 0.88 79.0 7.65e-01 100.0% 85.9%
3974490 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.87 75.0 7.47e-01 100.0% 87.5%
3965566 4.1.1.162 ↗ beta barrels › SH3 › SH3 › SH3 › DUF502 0.87 80.0 7.75e-01 100.0% 88.2%
3645842 4.1.1.162 ↗ beta barrels › SH3 › SH3 › SH3 › DUF502 0.82 72.0 7.17e-01 100.0% 91.3%
3704395 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 50.0 5.39e-01 83.1% 84.4%
3253267 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 54.0 5.24e-01 84.4% 71.8%
3931055 4.1.1.311 ↗ beta barrels › SH3 › SH3 › SH3 › BRWD_AD 0.69 53.0 5.37e-01 92.2% 82.7%
4012899 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 59.0 4.67e-01 100.0% 81.3%
3691144 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.64 49.0 5.18e-01 85.7% 91.4%
3723834 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 49.0 5.15e-01 85.7% 91.4%
3465215 4.1.1.25 ↗ beta barrels › SH3 › SH3 › SH3 › PAZ 0.63 56.0 4.67e-01 100.0% 74.8%
3830352 4.1.1.94 ↗ beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.61 49.0 4.78e-01 85.7% 80.0%
5025498 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.59 42.0 4.08e-01 88.3% 66.7%
197051 4.1.1.74 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3247 0.58 43.0 4.14e-01 92.2% 67.7%
3781935 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.58 43.0 3.69e-01 79.2% 84.0%
3266685 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.57 46.0 2.57e-01 90.9% 16.3%
5066012 2.1.1.123 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CDC24_OB3 0.57 45.0 4.13e-01 90.9% 95.5%
4975881 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 45.0 3.83e-01 90.9% 72.6%
5074493 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.56 44.0 3.96e-01 89.6% 87.8%
4402756 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 44.0 3.93e-01 90.9% 86.7%
3706903 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.56 42.0 3.40e-01 81.8% 64.1%
3603253 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.56 44.0 4.08e-01 90.9% 92.4%
4929019 2.1.1.111 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ssb-like_OB 0.56 40.0 3.79e-01 77.9% 94.7%
3472797 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.56 45.0 3.79e-01 92.2% 84.3%
5047636 2.1.1.111 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ssb-like_OB 0.55 44.0 4.00e-01 90.9% 88.2%
3786271 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.55 40.0 3.24e-01 77.9% 66.9%
3722822 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 39.0 2.47e-01 75.3% 16.3%
4945685 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 44.0 3.86e-01 92.2% 84.0%
4930095 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.55 43.0 3.97e-01 90.9% 90.9%
4967296 2.1.1.76 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.55 40.0 3.76e-01 80.5% 93.0%
None — 0.54 43.0 2.77e-01 85.7% 35.1%
3662669 2.1.1.76 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.54 45.0 3.76e-01 97.4% 85.3%
3367063 2.1.1.76 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.54 44.0 3.26e-01 96.1% 50.0%
3542604 2.1.1.76 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.54 42.0 3.68e-01 90.9% 80.0%
376 2.1.1.20 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Phage_DNA_bind 0.54 36.0 3.55e-01 70.1% 98.9%
5020458 2.1.1.111 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ssb-like_OB 0.54 43.0 3.90e-01 90.9% 90.9%
4954091 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.54 43.0 3.83e-01 92.2% 83.3%
4931879 2.1.1.76 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.54 39.0 3.62e-01 88.3% 60.0%
4948170 2.1.1.42 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.54 43.0 3.80e-01 90.9% 86.7%
5020457 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 43.0 3.89e-01 90.9% 91.8%
3882652 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 42.0 3.69e-01 90.9% 83.1%
5032255 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 36.0 3.76e-01 81.8% 77.1%
3505092 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.53 38.0 3.55e-01 76.6% 64.0%
5066013 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.53 42.0 3.85e-01 92.2% 92.7%
4974920 2.1.1.76 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.53 38.0 3.55e-01 77.9% 92.0%
5004284 2.1.1.111 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ssb-like_OB 0.53 42.0 3.46e-01 93.5% 72.5%
5020456 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 41.0 3.78e-01 90.9% 90.9%
4962649 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 43.0 3.95e-01 97.4% 97.3%
5012509 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.52 43.0 3.82e-01 96.1% 91.7%
3278010 222.1.1.12 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.52 37.0 2.93e-01 75.3% 85.0%
5050058 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 41.0 3.27e-01 90.9% 58.3%
4982873 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.52 37.0 3.44e-01 77.9% 87.6%
4951392 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 42.0 3.52e-01 96.1% 98.7%
5057108 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.51 42.0 3.83e-01 97.4% 93.0%
5077400 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.51 37.0 3.43e-01 77.9% 58.7%
5020459 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 36.0 3.45e-01 77.9% 92.9%
3652009 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 43.0 3.72e-01 98.7% 94.6%
5051438 2.1.1.76 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.51 41.0 3.60e-01 93.5% 86.2%
1954221 2.26.1.1 ↗ beta barrels › OB-fold › Arcadin-1 › Arcadin-1 › Arcadin_1 0.51 38.0 3.87e-01 81.8% 92.0%
5081845 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 37.0 3.46e-01 80.5% 92.0%
4958552 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.50 38.0 3.42e-01 84.4% 65.2%
3929845 1.1.7.2 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L3 0.50 41.0 2.78e-01 93.5% 35.5%
3645516 296.1.1.1 ↗ a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › NIR_SIR 0.50 37.0 3.20e-01 80.5% 80.0%