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MG592671.1__AUS02723.1__NVP2275O_142__00142

Bact-Vir

MG592671.1__AUS02723.1__NVP2275O_142__00142

Identity

Accession:
MG592671 ↗
Kingdom:
phage

Quality

87.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_2.275.O._10N.286.54.E11

TaxID: 1881285

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-125
PDB
Domain cluster: rep: NC_020158__YP_007378970.1__HVTV1-65__00064__D54-164
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10263.16 best SprT-like 31.6 1.80e-07 84.5% 56.1%
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4fh3A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.65 37.0 3.77e-01 95.1% 55.2%
1lmlA01 3.10.170.20 Alpha Beta › Roll › Elastase; domain 1 › 0.62 51.0 4.58e-01 87.8% 84.1%
4hteA01 1.20.58.1730 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 34.0 3.25e-01 89.4% 46.2%
1neiA00 3.30.160.220 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YoaG 0.60 31.0 4.06e-01 89.4% 98.3%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3739141 2498.1.1.39 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like 0.78 71.0 6.93e-01 100.0% 89.6%
3485197 2498.1.1.39 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like 0.78 68.0 6.19e-01 95.9% 71.2%
3730466 2498.1.1.39 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like 0.76 70.0 6.33e-01 98.4% 85.0%
5029843 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.74 62.0 6.07e-01 95.1% 83.1%
3283862 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.73 65.0 4.98e-01 95.9% 47.0%
5004271 2498.1.1.1 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M10 0.70 61.0 5.58e-01 93.5% 81.1%
3987761 2498.1.1.1 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M10 0.70 59.0 5.51e-01 91.9% 77.3%
3509435 2498.1.1.39 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like 0.69 62.0 6.07e-01 95.1% 94.6%
3612571 2498.1.1.14 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8 0.67 59.0 3.96e-01 95.1% 44.8%
3325373 2498.1.1.14 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8 0.67 60.0 3.97e-01 97.6% 50.1%
5066134 2498.1.1.1 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M10 0.67 59.0 4.73e-01 96.7% 63.7%
3598939 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.66 59.0 3.86e-01 97.6% 81.5%
4926799 2498.1.1.1 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M10 0.65 57.0 4.98e-01 95.1% 77.3%
3599105 2498.1.1.14 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8 0.65 59.0 3.87e-01 100.0% 84.8%
3705157 2498.1.1.14 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8 0.63 58.0 4.58e-01 100.0% 81.6%
4958442 2008.1.1.51 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › McrBC 0.63 46.0 4.12e-01 77.2% 100.0%
4090810 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.61 54.0 4.53e-01 95.1% 73.7%
3710083 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.59 49.0 4.30e-01 89.4% 74.4%
4883002 245.1.1.0 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.55 24.0 3.31e-01 78.9% 80.3%
4938365 205.1.1.0 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin 0.50 28.0 3.46e-01 94.3% 90.5%
D2 high residues 148-192
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wh2A01 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.65 48.0 4.44e-01 100.0% 60.7%
3na7A00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.65 47.0 3.07e-01 86.7% 15.6%
6zepA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.64 43.0 2.61e-01 97.8% 9.6%
2m6pA00 2.20.28.270 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase-binding protein A 0.60 45.0 4.52e-01 97.8% 82.6%
7qjnA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.60 46.0 2.93e-01 91.1% 54.2%
3bxwA03 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.59 51.0 4.82e-01 97.8% 100.0%
1e29A00 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.58 47.0 3.50e-01 97.8% 88.9%
2qqrA02 3.10.330.70 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.58 47.0 4.57e-01 97.8% 100.0%
2j4xA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.57 46.0 3.47e-01 95.6% 77.4%
1wzoA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.57 42.0 4.35e-01 100.0% 95.0%
7kw8A02 3.20.170.30 Alpha Beta › Alpha-Beta Barrel › ADP-ribosylation fold › 0.57 38.0 3.35e-01 73.3% 100.0%
1et9A01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.56 45.0 3.51e-01 95.6% 90.9%
2e4qA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.55 39.0 3.11e-01 80.0% 86.1%
3ce2A02 1.10.287.830 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › putative peptidase helix hairpin domain like 0.54 41.0 4.15e-01 100.0% 87.2%
3hh2D03 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.53 38.0 4.00e-01 97.8% 89.7%
2lvhA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.53 39.0 3.99e-01 100.0% 86.7%
4chkB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 41.0 3.47e-01 95.6% 84.6%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 43.0 3.42e-01 100.0% 64.8%
2o2zA00 3.40.50.10680 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CofD-like domains 0.52 36.0 2.25e-01 77.8% 36.5%
2o5hA00 1.10.3510.10 Mainly Alpha › Orthogonal Bundle › NMB0513-like › NMB0513-like 0.52 43.0 3.17e-01 100.0% 43.8%
1yc5A02 3.30.1600.10 Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' 0.51 36.0 3.24e-01 100.0% 48.8%
3purA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.50 39.0 3.38e-01 88.9% 62.2%
5z06A01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.50 38.0 2.80e-01 100.0% 37.0%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4136939 7056.1.1.0 ↗ few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan 0.81 65.0 6.79e-01 95.6% 100.0%
4401347 375.1.1.128 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_SprT 0.80 68.0 6.39e-01 100.0% 78.2%
4083015 7056.1.1.3 ↗ few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zn_ribbon_SprT 0.79 63.0 6.56e-01 95.6% 100.0%
4219081 7056.1.1.3 ↗ few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zn_ribbon_SprT 0.78 64.0 6.50e-01 97.8% 93.3%
3388125 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.77 63.0 6.33e-01 97.8% 95.6%
4931448 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.76 63.0 6.17e-01 97.8% 94.0%
3937472 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.68 56.0 4.42e-01 100.0% 93.3%
5050237 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 52.0 5.26e-01 100.0% 97.8%
3511270 214.1.1.9 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.65 53.0 4.08e-01 100.0% 65.0%
3587273 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 54.0 4.98e-01 97.8% 85.0%
3721277 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.64 39.0 2.39e-01 91.1% 8.8%
5068907 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 50.0 5.00e-01 97.8% 91.1%
3243669 4076.2.1.0 ↗ a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like 0.64 52.0 4.81e-01 100.0% 70.0%
3219283 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.63 50.0 4.03e-01 100.0% 90.0%
3513931 214.1.1.9 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.63 52.0 4.08e-01 100.0% 70.9%
3303628 822.1.1.3 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_ATXR3 0.61 45.0 4.38e-01 100.0% 74.0%
3460381 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.60 50.0 4.53e-01 100.0% 70.8%
4838146 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.60 47.0 4.54e-01 100.0% 79.6%
None — 0.60 45.0 4.32e-01 100.0% 70.0%
4935756 242.2.1.0 ↗ a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like 0.59 42.0 3.99e-01 73.3% 87.3%
4026243 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.59 48.0 3.79e-01 100.0% 57.3%
3333001 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.59 47.0 4.43e-01 100.0% 75.0%
3991259 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.59 50.0 4.62e-01 100.0% 75.0%
3709844 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.59 45.0 4.19e-01 100.0% 66.2%
5025086 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.58 47.0 4.56e-01 100.0% 94.5%
3596494 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 40.0 4.28e-01 80.0% 94.3%
4101701 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 44.0 4.53e-01 84.4% 95.0%
3520111 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.58 47.0 4.31e-01 100.0% 71.9%
3699635 376.1.1.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.57 43.0 3.88e-01 100.0% 57.3%
3725558 221.1.1.184 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF7357 0.57 40.0 2.91e-01 100.0% 24.1%
3527973 376.1.1.29 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_4 0.57 43.0 3.62e-01 100.0% 45.6%
3221216 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.57 46.0 3.73e-01 100.0% 45.0%
3855533 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.57 44.0 3.87e-01 97.8% 57.5%
3700891 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.56 43.0 3.69e-01 100.0% 48.3%
3566406 376.1.1.27 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.56 43.0 3.63e-01 97.8% 48.4%
None — 0.56 45.0 3.42e-01 97.8% 95.2%
3373462 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.54 40.0 2.86e-01 86.7% 95.0%
3730939 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.52 39.0 2.99e-01 95.6% 51.7%
4024066 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.52 40.0 3.50e-01 100.0% 95.3%
3549440 376.1.1.29 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_4 0.52 40.0 3.42e-01 100.0% 48.9%
3559876 376.1.1.29 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_4 0.51 38.0 3.25e-01 100.0% 44.0%
5030054 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 35.0 2.76e-01 73.3% 45.5%
4319297 101.1.9.5 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.51 36.0 3.23e-01 80.0% 88.6%
3521800 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.51 35.0 3.65e-01 80.0% 100.0%
4091315 304.24.1.1 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.50 42.0 3.27e-01 100.0% 61.8%
3251184 240.2.1.0 ↗ a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Insert subdomain of RNA polymerase alpha subunit › Insert subdomain of RNA polymerase alpha subunit 0.50 34.0 3.16e-01 71.1% 96.7%