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MG592671.1__AUS02849.1__NVP2275O_268__00268

Bact-Vir

MG592671.1__AUS02849.1__NVP2275O_268__00268

Identity

Accession:
MG592671 ↗
Kingdom:
phage

Quality

55.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 71-112
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hshE00 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.78 63.0 5.88e-01 100.0% 72.7%
3igmA00 1.20.5.2050 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.75 52.0 4.72e-01 100.0% 55.4%
3n3fA01 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.74 60.0 6.00e-01 97.6% 90.7%
1yu0A01 2.10.10.30 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.74 59.0 5.64e-01 100.0% 76.5%
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.72 55.0 5.12e-01 92.9% 66.1%
5hsqA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.72 55.0 4.06e-01 92.9% 33.3%
3cpxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.68 52.0 4.68e-01 88.1% 79.0%
1wquA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.67 54.0 4.13e-01 100.0% 38.6%
4l8jA01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.67 47.0 3.66e-01 76.2% 53.1%
1h9oA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.67 55.0 4.23e-01 100.0% 42.6%
2qlvB02 2.20.25.290 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.66 46.0 4.77e-01 73.8% 89.5%
1qyaB01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.66 54.0 3.84e-01 100.0% 44.4%
3jtzA00 3.30.160.390 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain 0.65 51.0 4.31e-01 100.0% 49.4%
3j7yD01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 54.0 4.06e-01 95.2% 49.1%
1tpmA00 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.65 49.0 4.72e-01 95.2% 72.0%
2e4qA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.64 50.0 3.83e-01 92.9% 36.1%
4joiC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 51.0 3.89e-01 100.0% 70.3%
2p25A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.63 44.0 3.27e-01 76.2% 47.9%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.62 46.0 3.68e-01 83.3% 76.7%
5llwA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.62 48.0 3.95e-01 95.2% 44.6%
2gnxA02 3.30.450.240 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.61 48.0 3.70e-01 92.9% 45.0%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.61 49.0 3.55e-01 97.6% 55.5%
1ob8A00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.61 50.0 3.78e-01 100.0% 52.9%
7oo1A01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.60 48.0 4.02e-01 92.9% 53.2%
5i7pA02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.60 45.0 4.37e-01 85.7% 81.2%
3gceA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.60 44.0 3.56e-01 95.2% 36.5%
3wirA03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.60 48.0 4.25e-01 97.6% 65.2%
3gqbA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.60 48.0 4.17e-01 97.6% 71.8%
6l4lA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.60 46.0 3.46e-01 100.0% 61.8%
2v8qB00 6.20.250.60 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.59 49.0 4.23e-01 100.0% 61.6%
4g2sA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.59 44.0 3.51e-01 92.9% 66.0%
4bq6F00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.58 45.0 3.25e-01 95.2% 64.4%
2g8sB00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.58 49.0 2.90e-01 100.0% 34.0%
2nvmA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.57 39.0 3.06e-01 71.4% 32.7%
1x31C01 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.56 41.0 3.34e-01 95.2% 37.1%
2cfuA03 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.54 43.0 3.19e-01 95.2% 41.9%
2azeB00 6.10.250.540 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.54 34.0 2.66e-01 92.9% 24.8%
3k50A02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.54 45.0 3.50e-01 100.0% 78.0%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 37.0 3.47e-01 73.8% 63.2%
4bdxA00 2.10.25.10 Mainly Beta › Ribbon › Laminin › Laminin 0.54 37.0 3.24e-01 92.9% 42.2%
2nwvA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.53 36.0 2.78e-01 73.8% 58.9%
3gdoA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.53 44.0 2.89e-01 100.0% 29.6%
3eb8B01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.52 40.0 3.62e-01 88.1% 63.9%
3hi2B00 3.30.2310.40 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › 0.51 39.0 3.20e-01 95.2% 63.9%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.51 41.0 2.60e-01 95.2% 49.2%
4ntqB00 3.30.2450.20 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.50 38.0 2.85e-01 97.6% 33.1%
1v1pB02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 37.0 3.32e-01 92.9% 81.1%
1ddvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 45.0 3.31e-01 100.0% 53.8%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4026577 252.2.1.1 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.80 54.0 4.96e-01 73.8% 54.5%
3214385 391.1.1.7 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 0.76 59.0 4.98e-01 92.9% 51.4%
4955635 375.1.1.63 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular 0.75 60.0 5.27e-01 92.9% 59.4%
4523246 391.1.2.3 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › SVWC 0.74 56.0 4.96e-01 95.2% 55.4%
3509348 214.1.1.15 a+b two layers › SH2 › SH2 › SH2 › DUF7063, DUF7145 0.74 62.0 3.77e-01 100.0% 28.7%
4838661 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.73 57.0 4.32e-01 92.9% 39.4%
3580489 391.1.2.9 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › Fn1_2 0.71 56.0 5.55e-01 88.1% 91.1%
3623943 391.1.1.7 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 0.71 56.0 4.66e-01 88.1% 49.3%
4957682 66.1.1.1 beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.71 57.0 4.37e-01 92.9% 39.8%
3271846 391.1.2.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.70 51.0 4.74e-01 88.1% 61.8%
4044986 391.1.2.3 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › SVWC 0.70 53.0 4.48e-01 85.7% 48.0%
3477642 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.70 60.0 4.34e-01 100.0% 38.3%
5069323 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 53.0 5.15e-01 92.9% 76.0%
3935342 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.69 57.0 4.27e-01 100.0% 40.0%
3995595 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.69 59.0 4.15e-01 100.0% 33.3%
4991056 375.1.1.63 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular 0.69 53.0 4.92e-01 92.9% 67.3%
3518947 214.1.1.10 a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.69 56.0 4.17e-01 100.0% 36.7%
4029439 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.68 48.0 4.09e-01 100.0% 46.4%
5028514 375.1.1.63 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular 0.66 52.0 4.74e-01 92.9% 65.0%
4927153 375.1.1.63 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular 0.66 51.0 4.74e-01 92.9% 67.3%
3890372 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.66 54.0 4.15e-01 100.0% 44.5%
3940997 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.66 49.0 3.53e-01 83.3% 37.0%
4932491 221.1.2.7 a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › RS4NT 0.66 49.0 3.79e-01 88.1% 62.7%
4656410 1.1.9.32 beta barrels › cradle loop barrel › RIFT-related › PUA domain › TnpB_IS66 0.65 53.0 4.36e-01 100.0% 92.1%
4078246 9.4.1.1 beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › DAP_B 0.65 42.0 3.59e-01 71.4% 37.3%
4960549 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 42.0 3.95e-01 97.6% 56.0%
4631930 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.65 52.0 3.86e-01 100.0% 49.2%
4090709 101.1.2.8 alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C 0.65 46.0 3.45e-01 100.0% 29.4%
3923314 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.64 54.0 3.38e-01 97.6% 25.3%
5069785 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.64 49.0 3.59e-01 90.5% 29.6%
5029687 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 46.0 4.58e-01 92.9% 80.0%
3906671 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 44.0 4.51e-01 73.8% 87.5%
3623273 101.1.2.712 alpha arrays › HTH › HTH › winged helix domain › FNIP_C 0.64 52.0 3.22e-01 100.0% 35.6%
3692189 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 50.0 3.61e-01 92.9% 43.7%
4210311 66.1.1.1 beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.63 49.0 3.77e-01 95.2% 36.1%
3517650 214.1.1.10 a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.62 49.0 3.97e-01 100.0% 43.0%
3231088 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.62 46.0 4.64e-01 95.2% 90.0%
4018561 223.2.1.10 a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.62 48.0 3.45e-01 92.9% 51.7%
4928895 79.1.1.0 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.62 51.0 3.19e-01 100.0% 15.7%
4946684 2004.1.1.308 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.61 49.0 2.97e-01 100.0% 19.1%
4028013 252.2.1.1 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.60 47.0 3.91e-01 100.0% 49.3%
5076987 2004.1.1.308 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.59 48.0 2.94e-01 100.0% 29.5%
4023919 252.2.1.1 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.59 49.0 4.22e-01 100.0% 60.0%
5000503 4.6.1.0 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.58 51.0 3.86e-01 100.0% 53.0%
4032577 2002.1.1.52 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Peptidase_U32 0.57 39.0 2.43e-01 76.2% 40.0%
3768845 4294.1.1.0 few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.57 42.0 3.34e-01 88.1% 35.2%
4030681 252.2.1.1 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.56 45.0 3.92e-01 100.0% 56.9%
3310464 375.1.1.69 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_12 0.56 41.0 4.08e-01 92.9% 84.0%
3936758 391.1.1.7 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 0.55 42.0 3.81e-01 92.9% 60.0%
4942828 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.54 40.0 2.82e-01 100.0% 22.0%
3871990 391.1.2.1 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC 0.54 38.0 3.63e-01 81.0% 63.6%
3476979 391.1.2.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.53 37.0 3.00e-01 95.2% 34.0%
4216580 298.1.1.8 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C 0.52 43.0 2.75e-01 100.0% 25.7%
4028916 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.51 43.0 3.25e-01 100.0% 61.8%
4932907 2005.1.1.10 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF 0.51 44.0 2.67e-01 100.0% 64.4%
3738189 2.1.1.81 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rrp44_S1 0.51 39.0 3.09e-01 88.1% 93.7%
D2 high residues 121-261
PDB