Back to structures

MG592671.1__AUS02891.1__NVP2275O_310__00310

Bact-Vir

MG592671.1__AUS02891.1__NVP2275O_310__00310

Identity

Accession:
MG592671 ↗
Kingdom:
phage

Quality

68.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-63
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.73 52.0 5.81e-01 86.9% 100.0%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.72 63.0 5.58e-01 100.0% 76.9%
4innA00 2.40.128.520 Mainly Beta › Beta Barrel › Lipocalin › 0.66 55.0 4.14e-01 91.8% 83.6%
1o70A02 2.30.180.10 Mainly Beta › Roll › FAS1 domain › FAS1 domain 0.66 52.0 3.93e-01 88.5% 37.2%
3qwuA02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.63 43.0 3.05e-01 70.5% 58.3%
4hwmA00 2.40.128.500 Mainly Beta › Beta Barrel › Lipocalin › YedD-like protein 0.63 54.0 4.42e-01 98.4% 86.3%
3cpxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.62 47.0 4.71e-01 100.0% 80.6%
3n6rA03 3.30.700.30 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › 0.62 53.0 4.24e-01 100.0% 80.5%
2cofA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 45.0 3.85e-01 82.0% 72.9%
1ljoA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 50.0 4.73e-01 96.7% 94.7%
4hdoA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 47.0 4.16e-01 86.9% 78.3%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 49.0 4.40e-01 91.8% 82.8%
7kcgA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.60 44.0 3.51e-01 82.0% 100.0%
3jb9F00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 49.0 4.55e-01 98.4% 86.6%
4g9mB00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.59 49.0 3.84e-01 96.7% 97.9%
2lg1A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 48.0 3.95e-01 91.8% 73.0%
4jp0A01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.59 44.0 3.44e-01 82.0% 98.6%
2obdA02 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.59 43.0 3.12e-01 80.3% 72.0%
1mi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 47.0 4.03e-01 91.8% 85.7%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 47.0 3.96e-01 91.8% 69.7%
1vpkA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.58 43.0 3.63e-01 83.6% 78.2%
6i18A04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.58 40.0 3.41e-01 70.5% 100.0%
3kyfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 49.0 4.11e-01 100.0% 61.4%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 47.0 3.86e-01 91.8% 76.9%
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 49.0 4.46e-01 100.0% 80.2%
3tfmA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 47.0 4.09e-01 93.4% 82.8%
1v89A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 45.0 3.74e-01 91.8% 73.7%
2jeuA02 2.170.200.10 Mainly Beta › Beta Complex › Regulatory Protein E2; Chain: A; Domain 2 › Papillomavirus E2 early protein domain 0.56 43.0 3.67e-01 83.6% 66.3%
1sxjH01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.56 42.0 3.45e-01 83.6% 75.0%
3voqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 48.0 3.93e-01 96.7% 74.1%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.56 47.0 3.43e-01 100.0% 44.7%
6fezA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 42.0 3.68e-01 83.6% 97.9%
4lqzA00 2.40.128.570 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4909 0.55 42.0 3.37e-01 85.2% 99.2%
6fndA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 40.0 2.97e-01 82.0% 43.5%
1d3bB00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 44.0 4.09e-01 95.1% 95.1%
1gv4A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 42.0 3.17e-01 86.9% 79.5%
8ornD01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.54 45.0 3.34e-01 96.7% 89.2%
1j71A01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.54 43.0 3.21e-01 91.8% 57.2%
1burS00 3.30.190.10 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit 0.54 46.0 3.74e-01 100.0% 66.7%
2elbA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 44.0 3.82e-01 96.7% 73.5%
3o0hB02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 41.0 3.38e-01 86.9% 94.9%
4d6wA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.52 40.0 3.57e-01 86.9% 76.8%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.52 36.0 3.36e-01 86.9% 56.2%
5cvmA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.52 43.0 2.82e-01 98.4% 25.3%
2dx0A00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 43.0 3.55e-01 96.7% 82.9%
1mdaH00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 42.0 2.65e-01 96.7% 89.7%
6g6qA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 39.0 3.00e-01 85.2% 43.8%
2dx0B01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 36.0 3.42e-01 75.4% 78.7%
3kl9A02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.50 43.0 4.08e-01 100.0% 83.8%
3qfgA00 2.60.40.1240 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 43.0 3.37e-01 100.0% 66.2%
1vx7200 3.30.390.110 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.50 38.0 3.21e-01 82.0% 53.8%
1ntvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 43.0 3.21e-01 95.1% 51.3%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4133709 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.72 55.0 3.83e-01 98.4% 24.9%
3781329 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 50.0 4.64e-01 83.6% 66.3%
3164898 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.65 51.0 4.51e-01 95.1% 56.8%
3979962 9.1.1.69 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › BigA_N 0.65 50.0 4.51e-01 83.6% 70.6%
4493566 1.1.5.26 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.65 52.0 4.30e-01 91.8% 84.3%
3221476 219.1.1.97 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CEPT76_peptidase 0.64 47.0 3.23e-01 78.7% 58.6%
4025181 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.64 51.0 4.19e-01 86.9% 70.0%
4220972 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.63 45.0 2.79e-01 75.4% 30.3%
3403716 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 49.0 3.98e-01 86.9% 84.2%
3609378 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 51.0 4.47e-01 91.8% 81.1%
3101373 3794.1.1.1 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › PCC_BT 0.62 54.0 4.19e-01 100.0% 76.6%
1124180 3794.1.1.1 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › PCC_BT 0.62 53.0 4.22e-01 100.0% 79.3%
4383747 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.62 51.0 3.83e-01 91.8% 50.3%
3777243 220.1.1.161 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26659 0.62 49.0 3.81e-01 86.9% 55.6%
3823929 220.1.1.163 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7046 0.61 50.0 4.05e-01 91.8% 60.8%
3630433 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 49.0 4.06e-01 91.8% 77.4%
4139090 4.1.1.364 beta barrels › SH3 › SH3 › SH3 › GatD_N 0.60 46.0 4.82e-01 88.5% 94.5%
3509385 220.1.1.30 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BEACH 0.60 47.0 3.67e-01 86.9% 62.9%
5029405 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.60 46.0 4.79e-01 88.5% 94.5%
3502962 4.1.1.89 beta barrels › SH3 › SH3 › SH3 › SM-ATX 0.60 50.0 4.69e-01 100.0% 100.0%
3601563 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 51.0 3.93e-01 96.7% 78.5%
4452140 6.1.1.11 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Fascin 0.60 47.0 3.89e-01 88.5% 100.0%
4990442 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.60 49.0 4.57e-01 96.7% 88.7%
3388697 4184.1.1.0 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.60 51.0 4.70e-01 98.4% 81.2%
3273863 220.1.1.44 beta barrels › PH domain-like › PH domain-like › PH domain-like › POB3_N 0.59 48.0 4.16e-01 91.8% 74.0%
5077846 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.59 48.0 4.63e-01 98.4% 93.3%
4497776 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.59 50.0 4.66e-01 100.0% 76.2%
4561925 6.1.1.0 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.59 50.0 4.19e-01 100.0% 100.0%
4575051 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.59 50.0 4.64e-01 100.0% 85.0%
3602548 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.58 44.0 3.57e-01 83.6% 71.2%
3247469 220.1.1.161 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26659 0.58 45.0 3.66e-01 86.9% 63.2%
3398219 4.1.1.89 beta barrels › SH3 › SH3 › SH3 › SM-ATX 0.58 48.0 4.30e-01 100.0% 83.2%
3890750 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 47.0 4.21e-01 91.8% 80.0%
3219334 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 48.0 3.46e-01 91.8% 68.6%
3854547 220.1.1.208 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF28207 0.58 46.0 3.81e-01 91.8% 63.3%
4322675 220.1.1.121 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SLA1 0.58 46.0 3.90e-01 91.8% 61.8%
154175 6.1.1.11 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Fascin 0.58 48.0 3.81e-01 95.1% 90.0%
3707723 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 46.0 3.96e-01 91.8% 72.4%
3592021 2.1.1.37 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_NTP_bind 0.58 39.0 3.35e-01 70.5% 83.0%
3717655 220.1.1.30 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BEACH 0.58 47.0 4.03e-01 91.8% 81.0%
5043685 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 45.0 4.32e-01 86.9% 100.0%
4939066 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.57 42.0 3.46e-01 83.6% 76.0%
4434185 3804.1.1.1 alpha bundles › CRISPR-Cas system RNase C2c2 N-terminal domain › CRISPR-Cas system RNase C2c2 N-terminal domain › CRISPR-Cas system RNase C2c2 N-terminal domain › Cas13a_endoribonuclease 0.57 42.0 3.17e-01 93.4% 30.3%
3570691 220.1.1.208 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF28207 0.57 46.0 3.85e-01 91.8% 69.1%
4932434 4.1.1.364 beta barrels › SH3 › SH3 › SH3 › GatD_N 0.57 42.0 4.11e-01 91.8% 72.9%
3508680 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 46.0 3.91e-01 91.8% 71.4%
3710624 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 46.0 3.40e-01 91.8% 54.5%
3555634 220.1.1.43 beta barrels › PH domain-like › PH domain-like › PH domain-like › SIN1_PH 0.56 48.0 3.70e-01 96.7% 65.5%
3263031 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 45.0 4.53e-01 100.0% 92.3%
3596153 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 45.0 3.80e-01 91.8% 69.4%
3842150 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 44.0 3.27e-01 90.2% 77.1%
3223650 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.56 40.0 3.21e-01 82.0% 75.9%
3594326 241.10.1.0 a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain 0.55 46.0 4.25e-01 95.1% 93.8%
3386881 2.1.1.7 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.55 37.0 3.41e-01 72.1% 85.6%
3167351 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.55 46.0 4.15e-01 96.7% 73.9%
5030272 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.55 43.0 3.11e-01 86.9% 54.1%
5027067 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.54 39.0 3.35e-01 83.6% 81.7%
4974641 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.54 42.0 4.10e-01 93.4% 94.3%
5009316 11.1.1.1439 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29294 0.54 44.0 3.20e-01 98.4% 93.7%
4259150 295.1.1.46 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › WapI 0.54 43.0 3.38e-01 90.2% 51.9%
3608754 10.1.1.56 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › TS_C 0.54 39.0 2.74e-01 80.3% 81.8%
4567650 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.54 46.0 3.82e-01 100.0% 54.8%
3719897 227.1.1.18 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DUF7881_C 0.53 38.0 3.20e-01 82.0% 75.2%
3472532 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 41.0 3.29e-01 91.8% 82.8%
3244743 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.52 44.0 3.42e-01 100.0% 42.7%
4572131 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.52 42.0 2.84e-01 91.8% 97.2%