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MG592671.1__AUS03060.1__NVP2275O_479__00479

Bact-Vir

MG592671.1__AUS03060.1__NVP2275O_479__00479

Identity

Accession:
MG592671 ↗
Kingdom:
phage

Quality

62.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_2.275.O._10N.286.54.E11

TaxID: 1881285

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 146-370
PDB
D2 medium residues 1-58
PDB
Domain cluster: rep: SRR1747055_scaffold_2_prodigal-single.1__X__X__00259__D1-52
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1e7lA01 3.40.1800.10 Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold › His-Me finger endonucleases 0.57 38.0 3.44e-01 100.0% 50.0%
1vk6A02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.56 39.0 2.98e-01 72.4% 80.9%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5048278 1056.1.1.1 ↗ a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › TruD 0.51 42.0 2.93e-01 96.6% 29.5%
4059028 109.21.1.3 ↗ alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Sec16_C 0.50 41.0 2.62e-01 100.0% 52.4%
3257563 101.1.1.76 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.50 36.0 3.09e-01 74.1% 55.8%
D3 medium residues 59-141
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kr7A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.62 35.0 4.09e-01 96.4% 80.7%
4lb0A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.55 43.0 3.54e-01 88.0% 78.7%
4pe5B02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 49.0 3.89e-01 100.0% 60.6%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 31.0 3.59e-01 71.1% 80.4%
6r77A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.54 42.0 3.54e-01 90.4% 78.9%
1zldA00 2.60.40.1920 Mainly Beta › Sandwich › Immunoglobulin-like › Proteinaceous host-selective toxin ToxA 0.54 42.0 3.98e-01 85.5% 77.5%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 31.0 3.26e-01 72.3% 63.0%
4kv7A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 46.0 3.78e-01 100.0% 56.1%
3q63F00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 43.0 3.65e-01 91.6% 69.1%
4e69A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.51 44.0 3.06e-01 100.0% 31.9%
2jroA01 3.30.1910.10 Alpha Beta › 2-Layer Sandwich › so0334 like fold › so0334 like domain 0.50 34.0 3.81e-01 90.4% 90.8%
2dcnA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.50 41.0 2.84e-01 91.6% 29.9%
1bnkA00 3.10.300.10 Alpha Beta › Roll › 3-methyladenine DNA Glycosylase; Chain A › Methylpurine-DNA glycosylase (MPG) 0.50 44.0 3.32e-01 96.4% 67.5%
5wt7A00 2.30.180.10 Mainly Beta › Roll › FAS1 domain › FAS1 domain 0.50 36.0 3.03e-01 75.9% 44.3%
4wjmA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.50 41.0 2.81e-01 91.6% 30.1%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4523548 4.8.1.35 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF1292 0.66 39.0 3.90e-01 80.7% 57.6%
3251414 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 43.0 3.91e-01 85.5% 55.5%
3926118 4.1.1.223 ↗ beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.57 32.0 3.61e-01 80.7% 73.3%
3329019 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.57 34.0 4.21e-01 71.1% 100.0%
4098502 286.1.1.4 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.55 44.0 3.46e-01 90.4% 69.5%
3215500 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 30.0 3.55e-01 79.5% 78.2%
3914858 5.1.4.281 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Hyd_WA, Tectonin 0.54 43.0 2.95e-01 88.0% 41.9%
3926430 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 31.0 3.43e-01 79.5% 75.0%
3509350 214.1.1.10 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.53 38.0 3.32e-01 100.0% 47.8%
3444858 7579.1.1.36 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.53 46.0 3.11e-01 100.0% 75.1%
4665960 286.1.1.0 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like 0.53 41.0 3.43e-01 89.2% 77.0%
3656090 270.1.1.1 ↗ beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Pur_DNA_glyco 0.52 46.0 3.48e-01 96.4% 70.9%
None — 0.52 41.0 2.73e-01 89.2% 88.5%
4029509 270.1.1.1 ↗ beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Pur_DNA_glyco 0.52 44.0 3.03e-01 95.2% 72.5%
4609520 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.51 43.0 3.02e-01 100.0% 27.9%