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MG592672.1__AUS03088.1__NVP3058O_018__00018

Bact-Vir

MG592672.1__AUS03088.1__NVP3058O_018__00018

Identity

Accession:
MG592672 ↗
Kingdom:
phage

Quality

90.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_3.058.O._10N.286.46.B8

TaxID: 1881379

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 16-86
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gxzD00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.65 50.0 3.77e-01 83.1% 64.1%
3ghaA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.63 50.0 3.72e-01 87.3% 65.1%
3hzrA02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.59 43.0 3.81e-01 80.3% 64.9%
3vkhB01 1.10.287.2620 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 30.0 3.15e-01 73.2% 57.8%
4l7nA01 1.20.142.10 Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › Poly(ADP-ribose) polymerase, regulatory domain 0.50 34.0 2.86e-01 83.1% 35.7%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5009703 5038.1.1.16 ↗ alpha superhelices › Cytochrome c oxidase subunit I-like › Cytochrome c oxidase subunit I-like › Cytochrome c oxidase subunit I-like › PF30795 0.60 52.0 3.35e-01 100.0% 40.9%
D2 medium residues 87-143
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3f6zB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.69 49.0 4.41e-01 75.4% 98.7%
1df0A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.66 56.0 4.92e-01 100.0% 84.8%
6epkA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.66 49.0 4.65e-01 82.5% 77.5%
5gviA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.65 55.0 3.47e-01 98.2% 36.8%
4g29A00 3.10.670.10 Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. 0.64 48.0 3.55e-01 84.2% 48.8%
1smpI00 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.64 49.0 4.12e-01 84.2% 95.0%
1okeB02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.64 47.0 4.32e-01 80.7% 70.1%
5cvmA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.64 53.0 3.41e-01 98.2% 35.7%
1fblA02 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.62 47.0 3.33e-01 84.2% 74.3%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.60 50.0 4.23e-01 98.2% 69.6%
2wdtC02 3.30.1490.420 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 0.59 48.0 4.20e-01 100.0% 96.0%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 49.0 4.73e-01 94.7% 98.5%
3buuB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.59 50.0 3.46e-01 100.0% 85.5%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 47.0 4.63e-01 91.2% 100.0%
3pggA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 49.0 4.50e-01 98.2% 94.9%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 46.0 4.58e-01 91.2% 88.3%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 43.0 4.15e-01 84.2% 91.2%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 45.0 4.44e-01 91.2% 100.0%
5hmaA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 39.0 3.33e-01 75.4% 85.6%
4k15A00 2.60.40.3860 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 40.0 3.18e-01 80.7% 71.7%
1sfnA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 43.0 2.90e-01 100.0% 20.8%
1dl5A02 3.55.20.10 Alpha Beta › 3-Layer(bab) Sandwich › Protein-l-isoaspartate O-methyltransferase; Chain: A, domain 2 › Protein-L-isoaspartyl O-methyltransferase, C-terminal domain 0.55 37.0 3.00e-01 70.2% 56.0%
2z1cB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 36.0 3.36e-01 70.2% 73.0%
2cwsA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 42.0 3.00e-01 98.2% 95.6%
1o67C00 2.40.33.20 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.53 46.0 3.16e-01 100.0% 72.4%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.53 40.0 3.44e-01 86.0% 62.2%
6jpaE00 1.20.140.150 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.52 40.0 2.95e-01 86.0% 61.5%
3k1lA01 3.30.457.40 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.52 41.0 3.56e-01 87.7% 88.0%
5ocqA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 41.0 2.83e-01 100.0% 76.8%
3gmgA00 3.30.70.1880 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function DUF881 0.52 45.0 3.42e-01 100.0% 74.1%
1sefA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 43.0 3.48e-01 100.0% 46.2%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 42.0 4.05e-01 96.5% 95.7%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 37.0 3.36e-01 80.7% 90.7%
1bdp001 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 39.0 2.80e-01 87.7% 50.0%
3njzA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 44.0 2.74e-01 100.0% 26.1%
3nvnA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 38.0 2.40e-01 84.2% 78.6%
1hdhA02 3.30.1120.10 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.51 36.0 3.44e-01 84.2% 81.8%
1sq4A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 38.0 3.08e-01 86.0% 78.6%
1e5rB01 2.60.120.330 Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain 0.50 43.0 3.09e-01 100.0% 58.9%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4012827 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.67 57.0 3.39e-01 96.5% 22.3%
3255440 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.63 55.0 3.41e-01 100.0% 40.9%
3692594 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.63 53.0 3.25e-01 100.0% 29.6%
3785384 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.62 41.0 3.06e-01 70.2% 26.2%
4086925 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.62 52.0 5.00e-01 94.7% 96.9%
3589829 9.4.1.0 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.62 49.0 4.09e-01 89.5% 96.2%
4101580 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.62 52.0 5.00e-01 94.7% 98.5%
4146937 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.61 51.0 4.97e-01 94.7% 98.5%
3910395 5.1.1.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed 0.61 46.0 3.22e-01 84.2% 67.5%
3590827 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.61 51.0 4.90e-01 94.7% 98.5%
5049016 7515.1.1.0 ↗ a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like 0.61 42.0 2.61e-01 71.9% 80.0%
4028885 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.60 50.0 4.88e-01 96.5% 100.0%
4158157 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.60 49.0 4.75e-01 93.0% 98.5%
3799652 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.60 49.0 4.29e-01 98.2% 73.7%
4073200 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.60 49.0 4.78e-01 94.7% 100.0%
3265170 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.60 49.0 4.74e-01 94.7% 98.5%
142633 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.59 49.0 4.73e-01 94.7% 98.5%
4051625 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.59 49.0 4.76e-01 94.7% 98.5%
26896 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.59 48.0 4.34e-01 98.2% 83.7%
4037383 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.58 48.0 4.68e-01 94.7% 98.5%
3599172 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 48.0 4.68e-01 94.7% 98.5%
4038269 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.58 48.0 4.66e-01 96.5% 100.0%
3227356 633.23.1.4 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 0.58 44.0 3.07e-01 86.0% 73.0%
5033093 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 48.0 3.94e-01 98.2% 98.3%
3596181 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.58 43.0 2.98e-01 84.2% 64.9%
3458699 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.58 41.0 3.02e-01 77.2% 67.5%
3738846 633.23.1.12 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Fig1 0.58 44.0 3.07e-01 84.2% 74.0%
3502265 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.57 42.0 3.08e-01 84.2% 70.8%
3479602 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.57 43.0 2.97e-01 84.2% 71.8%
3739320 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.57 42.0 2.98e-01 84.2% 63.3%
3578590 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.57 46.0 4.16e-01 98.2% 87.1%
3780283 10.32.1.1 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Laminin_B 0.57 47.0 3.25e-01 100.0% 44.3%
4284764 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.56 46.0 4.51e-01 96.5% 100.0%
4936963 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 40.0 3.62e-01 78.9% 92.9%
3222321 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.56 47.0 3.16e-01 100.0% 29.0%
3615220 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.56 41.0 3.04e-01 84.2% 72.0%
3609092 633.23.1.23 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Amastin 0.55 41.0 3.03e-01 84.2% 76.6%
3588172 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.55 45.0 3.37e-01 100.0% 35.3%
3474631 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.54 44.0 3.27e-01 98.2% 63.9%
3480749 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.54 41.0 2.82e-01 84.2% 72.1%
3607829 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.54 41.0 2.86e-01 84.2% 69.5%
3212409 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.54 42.0 3.25e-01 89.5% 90.3%
3409506 633.23.1.3 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › L_HMGIC_fpl 0.53 40.0 2.86e-01 86.0% 65.5%
4003463 220.1.1.168 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Tmpp129 0.53 38.0 3.03e-01 77.2% 68.8%
3478959 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.53 39.0 2.86e-01 86.0% 65.8%
3482448 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.53 43.0 3.15e-01 96.5% 71.4%
3833943 220.1.1.128 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SPT16 0.53 38.0 2.84e-01 82.5% 48.6%
4000645 10.32.1.1 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Laminin_B 0.52 42.0 3.12e-01 98.2% 97.2%
3981268 210.1.2.2 ↗ a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › CBAH 0.52 42.0 2.73e-01 98.2% 92.6%
4025507 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.52 43.0 4.03e-01 100.0% 73.3%
3891368 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 43.0 3.54e-01 98.2% 80.9%
4177953 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.52 41.0 3.08e-01 96.5% 34.0%
3886774 633.23.1.1 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.52 39.0 2.77e-01 84.2% 73.7%
3590244 10.12.1.8 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding 0.51 42.0 3.05e-01 100.0% 31.2%
4324685 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.51 40.0 3.23e-01 86.0% 75.5%
5016434 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 35.0 3.28e-01 73.7% 93.3%
3896178 633.23.1.1 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.50 38.0 2.87e-01 86.0% 67.9%