←Back to structures
MG593800.1__AUG87113.1__SEA_ABBEYMIKOLON_42__00042
Bact-VirMG593800.1__AUG87113.1__SEA_ABBEYMIKOLON_42__00042
Identity
- Accession:
- MG593800 ↗
- Kingdom:
- phage
Quality
68.4
mean pLDDT
Taxonomy
TaxID: 2059880
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-51
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2af6A01 | 3.30.70.3180 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 46.0 | 3.39e-01 | 100.0% | 28.2% |
| 3stjA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.65 | 47.0 | 4.04e-01 | 100.0% | 47.1% |
| 6hhuA01 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 44.0 | 3.87e-01 | 100.0% | 53.8% |
| 3fawA01 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 49.0 | 4.05e-01 | 98.0% | 64.1% |
| 2f5tX02 | 2.30.30.690 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 47.0 | 3.99e-01 | 100.0% | 58.9% |
| 3ug9A02 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.57 | 40.0 | 2.60e-01 | 87.8% | 16.4% |
| 1khiA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 39.0 | 3.51e-01 | 87.8% | 48.0% |
| 1zpsA01 | 3.10.20.810 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphoribosyl-AMP cyclohydrolase | 0.56 | 48.0 | 3.93e-01 | 100.0% | 87.4% |
| 4f03A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.56 | 40.0 | 3.18e-01 | 77.6% | 44.8% |
| 1av4A03 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.55 | 45.0 | 2.69e-01 | 95.9% | 25.9% |
| 3aa0B01 | 1.20.58.570 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › F-actin capping protein, alpha/beta subunit, N-terminal domain | 0.54 | 40.0 | 3.28e-01 | 79.6% | 45.5% |
| 3akjA02 | 1.10.1070.20 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › | 0.54 | 36.0 | 2.39e-01 | 71.4% | 41.8% |
| 8gpsA02 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.53 | 41.0 | 3.48e-01 | 100.0% | 52.3% |
| 3g7nB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 46.0 | 2.89e-01 | 100.0% | 28.4% |
| 2lqkA00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.51 | 34.0 | 3.17e-01 | 73.5% | 60.0% |
| 2mn5A00 | 3.30.30.140 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › | 0.50 | 39.0 | 3.87e-01 | 100.0% | 83.9% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5041606 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.61 | 40.0 | 3.61e-01 | 100.0% | 50.8% |
| 3414210 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.60 | 47.0 | 4.04e-01 | 85.7% | 88.7% |
| 3213954 | 4964.1.1.2 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol | 0.59 | 48.0 | 3.27e-01 | 93.9% | 28.4% |
| 4029394 | 4964.1.1.2 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol | 0.58 | 47.0 | 3.21e-01 | 95.9% | 33.8% |
| 4928227 | 239.2.1.1 ↗ | beta barrels › Ribosomal protein L25-like › HisI-like › HisI-like › PRA-CH | 0.56 | 48.0 | 4.31e-01 | 100.0% | 98.6% |
| 4838547 | 834.1.1.1 ↗ | a+b two layers › Photosystem I subunit PsaD › Photosystem I subunit PsaD › Photosystem I subunit PsaD › PsaD | 0.56 | 39.0 | 3.30e-01 | 75.5% | 45.7% |
| 3425924 | 2006.1.2.3 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases › CDC45 | 0.56 | 45.0 | 2.69e-01 | 89.8% | 55.9% |
| 3706839 | 239.1.1.5 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C | 0.55 | 40.0 | 3.35e-01 | 100.0% | 42.0% |
| 4315437 | 2484.1.1.97 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas9_RuvC | 0.55 | 47.0 | 2.92e-01 | 100.0% | 39.3% |
| 3321918 | 4.1.1.81 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM14 | 0.54 | 38.0 | 4.02e-01 | 89.8% | 95.0% |
| 3718008 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 39.0 | 3.91e-01 | 95.9% | 82.0% |
| 3482099 | 5.1.4.237 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR36-Utp21_2nd | 0.53 | 45.0 | 2.91e-01 | 98.0% | 33.6% |
| 2138851 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.53 | 42.0 | 3.31e-01 | 95.9% | 39.7% |
| 3335828 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.53 | 38.0 | 3.14e-01 | 79.6% | 80.0% |
| 3779786 | 109.2.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Glyco_hydro_15 | 0.53 | 42.0 | 2.36e-01 | 91.8% | 7.1% |
| 3999926 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 37.0 | 3.71e-01 | 95.9% | 74.5% |
| 5045741 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 42.0 | 3.92e-01 | 100.0% | 72.3% |
| 3415092 | 11.1.1.5 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Zona_pellucida | 0.51 | 42.0 | 3.00e-01 | 100.0% | 94.7% |
| 3585671 | 4.1.1.18 ↗ | beta barrels › SH3 › SH3 › SH3 › CAP_GLY | 0.51 | 37.0 | 3.71e-01 | 100.0% | 80.0% |
| 3664328 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.51 | 37.0 | 2.81e-01 | 79.6% | 60.8% |
| 3390954 | 109.2.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Glyco_hydro_15 | 0.50 | 39.0 | 2.26e-01 | 100.0% | 7.5% |
| 2754401 | 3343.1.1.2 ↗ | alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal | 0.50 | 43.0 | 2.45e-01 | 100.0% | 15.9% |