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MG593803.1__AUG87271.1__SEA_ROWA_6__00006
Bact-VirMG593803.1__AUG87271.1__SEA_ROWA_6__00006
Identity
- Accession:
- MG593803 ↗
- Kingdom:
- phage
Quality
85.9
mean pLDDT
Taxonomy
TaxID: 2059883
Cluster
View cluster (166 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-49_73-134_267-299
Domain cluster:
rep: IMGVR_UViG_3300002120_000098-3300002120-C687J26616_100029157__D29-50_74-150_259-304
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ohgA01 | 3.30.2400.10 | Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › Major capsid protein gp5 | 0.85 | 67.0 | 6.69e-01 | 81.7% | 98.6% |
| 2e0zA01 | 3.30.2400.20 | Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › | 0.81 | 57.0 | 6.54e-01 | 92.3% | 96.3% |
| 6i9gA01 | 3.30.2400.30 | Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › | 0.76 | 66.0 | 6.24e-01 | 92.3% | 90.5% |
| 3dktA01 | 3.30.2400.30 | Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › | 0.75 | 65.0 | 6.14e-01 | 92.3% | 89.9% |
| 3bqwA01 | 3.15.30.10 | Alpha Beta › Super Roll › putative capsid protein of prophage fold › putative capsid protein of prophage domain like | 0.74 | 64.0 | 5.61e-01 | 93.0% | 95.2% |
| 4bfiB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.73 | 30.0 | 3.70e-01 | 72.5% | 58.9% |
| 3bjqA00 | 3.90.1690.10 | Alpha Beta › Alpha-Beta Complex › phage-related protein like fold › phage-related protein like domain | 0.72 | 63.0 | 4.89e-01 | 93.0% | 92.6% |
| 3fz2A00 | 3.30.70.1700 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phage minor tail protein U | 0.70 | 41.0 | 4.33e-01 | 73.2% | 64.1% |
| 3aawA02 | 3.30.2130.10 | Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like | 0.66 | 31.0 | 2.93e-01 | 74.6% | 36.4% |
| 1sqeA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.66 | 30.0 | 3.49e-01 | 70.4% | 58.4% |
| 3qkbA00 | 3.30.110.70 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B | 0.65 | 41.0 | 4.89e-01 | 82.4% | 94.7% |
| 1bdfA01 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.65 | 32.0 | 3.68e-01 | 73.2% | 61.3% |
| 3tupA02 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.65 | 33.0 | 3.91e-01 | 78.2% | 70.8% |
| 4noiA01 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.64 | 32.0 | 3.71e-01 | 73.2% | 64.1% |
| 1kcvL02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 30.0 | 3.45e-01 | 73.2% | 61.2% |
| 1vr4E00 | 3.30.110.70 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B | 0.59 | 38.0 | 4.63e-01 | 99.3% | 100.0% |
| 1j4wA01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.59 | 26.0 | 3.39e-01 | 71.1% | 74.3% |
| 4hudA01 | 3.30.2000.40 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser | 0.57 | 38.0 | 3.32e-01 | 73.2% | 45.2% |
| 1j6wA00 | 3.30.1360.80 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › S-ribosylhomocysteinase (LuxS) | 0.57 | 31.0 | 3.00e-01 | 72.5% | 44.1% |
| 4i6yA02 | 3.30.70.420 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain | 0.56 | 31.0 | 3.44e-01 | 74.6% | 65.5% |
| 3kd4A03 | 2.60.120.1130 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 28.0 | 2.89e-01 | 83.1% | 53.3% |
| 1khmA00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.51 | 26.0 | 3.14e-01 | 74.6% | 75.3% |
| 1repC02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 28.0 | 3.33e-01 | 72.5% | 81.3% |
ECOD (49)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3949155 | 2485.3.1.11 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › SrpI-like | 0.95 | 78.0 | 6.06e-01 | 83.8% | 87.5% |
| 3965498 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.86 | 70.0 | 5.13e-01 | 83.8% | 88.9% |
| 5081487 | 2485.3.1.10 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF5309 | 0.85 | 68.0 | 5.29e-01 | 81.7% | 95.2% |
| 5041371 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.84 | 78.0 | 5.81e-01 | 95.8% | 95.2% |
| 3946670 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.84 | 75.0 | 5.85e-01 | 93.0% | 89.1% |
| 4313471 | 2485.3.1.11 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › SrpI-like | 0.83 | 68.0 | 5.16e-01 | 84.5% | 84.0% |
| 4241362 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.83 | 74.0 | 5.68e-01 | 93.7% | 92.9% |
| 2651377 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.83 | 67.0 | 5.09e-01 | 83.8% | 86.5% |
| 2989289 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.82 | 68.0 | 5.05e-01 | 85.9% | 84.8% |
| 2841509 | 2485.3.1.12 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF6260 | 0.81 | 67.0 | 5.11e-01 | 85.9% | 88.4% |
| 4988094 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.80 | 70.0 | 5.64e-01 | 92.3% | 92.5% |
| 4884207 | 2485.3.1.7 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Major_capside | 0.79 | 64.0 | 4.98e-01 | 84.5% | 88.6% |
| 2989340 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.78 | 64.0 | 4.86e-01 | 85.9% | 84.1% |
| 3583655 | 2485.3.1.5 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp23 | 0.77 | 63.0 | 4.73e-01 | 85.2% | 88.4% |
| 3501742 | 2485.3.1.21 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phi29_MCP | 0.77 | 63.0 | 4.79e-01 | 85.9% | 91.0% |
| 2553816 | 2485.3.1.2 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 | 0.76 | 66.0 | 5.30e-01 | 92.3% | 89.8% |
| 194954 | 2485.3.1.2 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 | 0.76 | 66.0 | 5.49e-01 | 92.3% | 93.6% |
| 2831773 | 2485.3.1.2 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 | 0.75 | 66.0 | 5.25e-01 | 92.3% | 89.5% |
| 5081698 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.75 | 66.0 | 5.02e-01 | 92.3% | 94.1% |
| 4955362 | 2485.3.1.2 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 | 0.75 | 65.0 | 5.39e-01 | 90.8% | 95.3% |
| 2724409 | 2485.3.1.2 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 | 0.75 | 65.0 | 5.22e-01 | 92.3% | 89.8% |
| 4991535 | 2485.3.1.2 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 | 0.74 | 65.0 | 5.32e-01 | 92.3% | 92.2% |
| 4929755 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.73 | 64.0 | 5.05e-01 | 92.3% | 95.3% |
| 3802659 | 304.8.1.66 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF7049 | 0.73 | 38.0 | 4.36e-01 | 73.2% | 67.6% |
| 3369581 | 256.1.1.0 ↗ | a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like | 0.71 | 31.0 | 4.60e-01 | 71.8% | 96.7% |
| 3958239 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.71 | 31.0 | 3.96e-01 | 71.1% | 70.0% |
| 3977525 | 2485.3.1.4 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_P2 | 0.70 | 61.0 | 4.65e-01 | 94.4% | 87.7% |
| 5083079 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.70 | 61.0 | 4.66e-01 | 93.7% | 81.5% |
| 3952452 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.70 | 60.0 | 4.71e-01 | 92.3% | 90.4% |
| 5083777 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.69 | 60.0 | 4.62e-01 | 92.3% | 95.0% |
| 3442608 | 304.20.1.1 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP_RNA-bind | 0.67 | 38.0 | 3.86e-01 | 73.9% | 55.7% |
| 3387300 | 304.52.1.1 ↗ | a+b two layers › Alpha-beta plaits › YbeD/HP0495-like › YbeD/HP0495-like › DUF493 | 0.66 | 29.0 | 3.69e-01 | 71.8% | 68.8% |
| 3641833 | 304.8.1.57 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_ACR_D1 | 0.65 | 33.0 | 3.58e-01 | 73.2% | 56.7% |
| 2806361 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.65 | 56.0 | 4.57e-01 | 93.7% | 92.7% |
| 4952750 | 872.3.1.0 ↗ | a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like | 0.64 | 44.0 | 5.05e-01 | 83.1% | 96.2% |
| 5042257 | 256.1.1.0 ↗ | a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like | 0.63 | 41.0 | 4.36e-01 | 75.4% | 74.4% |
| 3602546 | 872.3.1.1 ↗ | a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_1 | 0.63 | 42.0 | 4.73e-01 | 82.4% | 92.2% |
| 4397160 | 305.1.1.1 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L | 0.62 | 32.0 | 3.45e-01 | 73.2% | 54.4% |
| 5377 | 304.52.1.1 ↗ | a+b two layers › Alpha-beta plaits › YbeD/HP0495-like › YbeD/HP0495-like › DUF493 | 0.62 | 27.0 | 3.42e-01 | 71.8% | 65.1% |
| 3955529 | 872.3.1.1 ↗ | a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_1 | 0.61 | 41.0 | 4.82e-01 | 76.1% | 97.0% |
| 3701983 | 304.153.1.0 ↗ | a+b two layers › Alpha-beta plaits › Collagenase G catalytic helper subdomain › Collagenase G catalytic helper subdomain | 0.61 | 42.0 | 3.89e-01 | 72.5% | 56.6% |
| 4462302 | 872.3.1.1 ↗ | a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_1 | 0.61 | 44.0 | 4.95e-01 | 82.4% | 96.4% |
| 4215969 | 872.3.1.1 ↗ | a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_1 | 0.60 | 43.0 | 4.71e-01 | 82.4% | 93.0% |
| 4330176 | 872.3.1.1 ↗ | a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_1 | 0.59 | 42.0 | 4.76e-01 | 81.7% | 97.2% |
| 3959344 | 872.3.1.1 ↗ | a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_1 | 0.58 | 41.0 | 4.53e-01 | 75.4% | 90.4% |
| 5014544 | 304.8.1.82 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF27325 | 0.54 | 33.0 | 3.36e-01 | 84.5% | 58.6% |
| 3944239 | 1.1.13.51 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_P2_GpU | 0.53 | 32.0 | 3.63e-01 | 73.2% | 79.0% |
| 3998885 | 273.1.1.0 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like | 0.52 | 46.0 | 4.38e-01 | 97.9% | 93.5% |
| 5022585 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.51 | 29.0 | 3.63e-01 | 78.2% | 96.2% |
D2
high
residues 136-262_303-313
Domain cluster:
rep: OK632026.1__UFK27510.1__X__00028__D137-262_297-308
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4hqnA01 | 2.20.100.10 | Mainly Beta › Single Sheet › TSP-1 type 1 repeat › Thrombospondin type-1 (TSP1) repeat | 0.60 | 21.0 | 2.93e-01 | 72.5% | 61.5% |
| 1yfsA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.55 | 46.0 | 3.94e-01 | 99.3% | 54.1% |
| 2wkcB00 | 2.40.50.400 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Lactococcus phage single-stranded DNA binding protein | 0.52 | 24.0 | 2.81e-01 | 79.7% | 57.3% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3949155 | 2485.3.1.11 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › SrpI-like | 0.76 | 72.0 | 5.63e-01 | 99.3% | 58.5% |
| 4960220 | 298.4.1.1 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E | 0.67 | 41.0 | 4.47e-01 | 89.1% | 73.0% |
| 4036496 | 298.4.1.1 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E | 0.66 | 39.0 | 4.02e-01 | 89.1% | 61.7% |
| 3090875 | 2485.3.1.14 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp10A-like | 0.63 | 59.0 | 4.46e-01 | 99.3% | 63.0% |
| 5041371 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.63 | 59.0 | 4.46e-01 | 100.0% | 53.9% |
| 4622618 | 298.4.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E | 0.62 | 37.0 | 4.06e-01 | 90.6% | 70.4% |
| 3967404 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.55 | 26.0 | 3.43e-01 | 70.3% | 84.3% |
| 4952790 | 2485.4.1.1 ↗ | a+b three layers › Thioredoxin-like › Fumarate hydratase N-terminal domain › Fumarate hydratase N-terminal domain › Fumerase | 0.53 | 43.0 | 4.00e-01 | 85.5% | 100.0% |