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MG603697.1__AUG88383.1__VPR_019__00019

Bact-Vir

MG603697.1__AUG88383.1__VPR_019__00019

Identity

Accession:
MG603697 ↗
Kingdom:
phage

Quality

76.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-44
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4rbnA01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.74 52.0 3.71e-01 79.5% 25.6%
1krlA00 6.20.50.130 Special › Other non-globular › N-terminal domain of TfIIb › 0.73 53.0 5.39e-01 79.5% 81.8%
1twfI02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.71 61.0 5.18e-01 100.0% 59.2%
1qypA00 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.70 56.0 5.31e-01 97.7% 77.2%
1x0tA02 6.20.50.20 Special › Other non-globular › N-terminal domain of TfIIb › 0.69 58.0 5.79e-01 97.7% 100.0%
3po3S02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.68 57.0 4.84e-01 95.5% 58.1%
2hn1A01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.65 47.0 3.43e-01 84.1% 44.4%
1sjiA03 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.64 46.0 3.39e-01 79.5% 74.2%
2cqaA01 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.63 47.0 3.96e-01 79.5% 100.0%
4a8jB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.63 51.0 3.25e-01 93.2% 26.8%
1a5yA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.61 52.0 3.17e-01 100.0% 29.2%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.61 52.0 5.11e-01 100.0% 95.8%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 47.0 3.74e-01 95.5% 53.7%
1rjtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 45.0 4.03e-01 90.9% 58.9%
1k32A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 51.0 3.00e-01 97.7% 19.7%
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.60 48.0 2.95e-01 100.0% 24.3%
2ivwA01 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.60 43.0 3.72e-01 90.9% 46.3%
1a15A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 43.0 3.92e-01 97.7% 55.2%
4lduA02 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.59 41.0 3.26e-01 77.3% 100.0%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 46.0 4.06e-01 100.0% 77.3%
3tw8A01 3.30.450.200 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module 0.57 43.0 3.12e-01 86.4% 84.1%
5ahoA01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.57 40.0 2.71e-01 77.3% 20.9%
2h1eA02 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 42.0 4.03e-01 84.1% 72.7%
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.56 38.0 2.73e-01 79.5% 84.5%
1b7yA00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.56 43.0 2.81e-01 100.0% 80.0%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 44.0 4.10e-01 100.0% 88.9%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.55 42.0 4.11e-01 100.0% 92.9%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 44.0 4.11e-01 100.0% 88.9%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 41.0 3.62e-01 95.5% 70.0%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 41.0 3.79e-01 95.5% 77.3%
1cp9B02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.54 41.0 3.65e-01 90.9% 58.9%
4o8sA01 3.10.450.620 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › JHP933, nucleotidyltransferase-like core domain 0.54 45.0 3.35e-01 100.0% 38.4%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 43.0 4.00e-01 100.0% 90.3%
1e5tA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 37.0 2.29e-01 81.8% 22.4%
3r4rA02 2.60.40.2590 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 44.0 3.29e-01 100.0% 70.4%
3njfA00 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.53 39.0 3.19e-01 95.5% 60.7%
4bfeC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 42.0 3.38e-01 100.0% 84.9%
2w5fB01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 44.0 3.10e-01 100.0% 83.6%
3rd7A00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.52 39.0 2.59e-01 100.0% 64.0%
2nlkA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.52 38.0 2.55e-01 95.5% 19.2%
1e8oD00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.52 40.0 3.52e-01 95.5% 63.2%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.51 41.0 3.42e-01 100.0% 93.3%
4bt2A02 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.51 41.0 3.12e-01 100.0% 83.7%
2qkdA03 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.51 44.0 4.22e-01 100.0% 90.2%
3dcxA00 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.51 41.0 3.19e-01 100.0% 53.0%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 41.0 3.67e-01 97.7% 69.4%
2lezA00 3.30.2450.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 0.50 37.0 2.96e-01 93.2% 79.2%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4961814 375.1.1.341 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7568 0.84 69.0 7.12e-01 93.2% 100.0%
4998373 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.83 73.0 7.04e-01 100.0% 96.0%
5048721 375.1.1.7 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.79 66.0 5.84e-01 95.5% 67.7%
5028865 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.78 67.0 6.47e-01 100.0% 90.0%
4937130 375.1.1.7 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.75 64.0 5.63e-01 97.7% 67.7%
5054449 375.1.1.7 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.74 64.0 5.55e-01 100.0% 63.8%
3907024 260.1.1.1 a+b duplicates or obligate multimers › beta-hairpin-alpha-hairpin repeat › beta-hairpin-alpha-hairpin repeat › beta-hairpin-alpha-hairpin repeat › Plectin 0.73 59.0 3.48e-01 88.6% 18.4%
5038934 375.1.1.7 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.73 60.0 5.56e-01 95.5% 74.1%
3673925 375.1.1.191 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_GRF 0.72 61.0 6.11e-01 100.0% 95.6%
3804890 375.1.1.7 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.72 61.0 5.57e-01 95.5% 72.9%
3204334 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.72 61.0 5.97e-01 100.0% 88.0%
4998035 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.72 60.0 5.84e-01 100.0% 92.0%
3199611 375.1.1.7 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.72 61.0 5.39e-01 95.5% 67.2%
3737071 375.1.1.7 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.72 62.0 5.63e-01 97.7% 74.6%
3659202 1.1.11.0 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain 0.71 51.0 4.21e-01 77.3% 45.0%
3828070 252.1.1.0 a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD 0.71 52.0 4.87e-01 95.5% 63.6%
3598298 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 57.0 5.23e-01 93.2% 76.7%
4013714 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 59.0 5.82e-01 95.5% 89.6%
3670182 2.1.1.1 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.70 54.0 4.01e-01 88.6% 35.2%
5061538 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 60.0 5.60e-01 95.5% 83.6%
3755722 103.4.1.0 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.70 57.0 3.86e-01 93.2% 24.0%
3309343 375.1.1.7 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.69 58.0 5.41e-01 95.5% 78.2%
3445009 103.4.1.0 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.69 58.0 3.86e-01 95.5% 24.0%
4963635 375.1.1.7 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.68 58.0 5.05e-01 97.7% 63.8%
4945758 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 55.0 4.87e-01 95.5% 62.9%
3805876 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.68 49.0 3.01e-01 100.0% 11.4%
3816604 375.1.1.7 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.68 55.0 4.91e-01 93.2% 64.6%
3652106 1.1.11.1 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.67 48.0 3.68e-01 77.3% 36.5%
3705742 375.1.1.7 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.67 56.0 5.18e-01 97.7% 77.6%
3263715 59.1.2.2 beta complex topology › triple barrel › triple barrel › RNase H2 subunits B and C › Ydr279_N 0.66 57.0 4.79e-01 100.0% 62.5%
3720866 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 53.0 4.86e-01 97.7% 66.2%
3704822 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 55.0 3.76e-01 95.5% 26.4%
3999634 9.3.1.0 beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.65 44.0 3.65e-01 72.7% 44.7%
3801858 252.1.1.0 a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD 0.65 50.0 4.54e-01 95.5% 63.3%
3190757 375.1.1.21 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.64 55.0 5.02e-01 100.0% 76.7%
5000727 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 52.0 4.92e-01 97.7% 83.6%
4945816 375.1.1.333 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › jr-ZPR1 0.63 55.0 5.14e-01 100.0% 85.5%
4014828 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 54.0 5.05e-01 100.0% 83.6%
4205423 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.62 48.0 4.13e-01 97.7% 52.0%
3684267 5.1.10.15 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › RPE65 0.62 47.0 3.45e-01 97.7% 29.2%
4997648 375.1.1.21 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.62 49.0 4.79e-01 93.2% 88.0%
2574473 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.61 47.0 4.80e-01 97.7% 97.6%
4028728 375.1.1.21 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.61 53.0 4.96e-01 100.0% 83.6%
3930705 4292.2.1.0 a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.60 51.0 3.99e-01 100.0% 46.0%
3496242 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 50.0 4.87e-01 100.0% 92.0%
5011152 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 48.0 4.51e-01 95.5% 83.6%
4001973 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 46.0 3.46e-01 93.2% 33.1%
4949036 375.1.1.21 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.58 50.0 4.84e-01 100.0% 92.0%
5079755 375.1.1.21 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.58 49.0 4.64e-01 100.0% 87.3%
5052205 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.57 47.0 2.64e-01 97.7% 8.2%
3606532 2484.6.1.0 mixed a+b and a/b › Ribonuclease H-like › Periplasmic domain of ExbD/TolR › Periplasmic domain of ExbD/TolR 0.57 41.0 3.34e-01 81.8% 38.9%
3212945 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.57 41.0 3.90e-01 88.6% 64.4%
4994111 375.1.1.21 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.57 47.0 4.43e-01 100.0% 90.9%
4990926 375.1.1.21 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.57 47.0 4.60e-01 100.0% 96.0%
3373579 5.1.4.304 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR11_2nd 0.56 42.0 2.57e-01 95.5% 20.0%
4661764 601.52.1.2 alpha bundles › Four-helical up-and-down bundle › Flagellar hook-associated protein 1 helical domain › Flagellar hook-associated protein 1 helical domain › FlgK_D1 0.56 45.0 2.74e-01 100.0% 19.2%
3389626 4292.2.1.0 a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.56 44.0 3.91e-01 100.0% 62.7%
4364336 375.1.1.21 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.56 44.0 4.21e-01 97.7% 94.5%
4970648 375.1.1.21 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.56 47.0 4.59e-01 100.0% 94.0%
5054090 218.1.1.2 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N 0.56 41.0 3.18e-01 86.4% 80.0%
4041586 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.55 42.0 3.93e-01 100.0% 78.5%
3497371 10.13.1.0 beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A 0.55 47.0 3.14e-01 100.0% 51.7%
4969137 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.55 44.0 3.95e-01 100.0% 82.9%
3393358 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.54 45.0 3.62e-01 97.7% 56.8%
3408588 4.1.1.243 beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.54 46.0 4.02e-01 100.0% 62.9%
3257177 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.52 45.0 2.57e-01 100.0% 16.6%
4104219 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.52 41.0 3.79e-01 100.0% 87.7%
5081581 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 40.0 2.69e-01 100.0% 20.0%
3589900 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.51 39.0 3.37e-01 93.2% 47.1%
4946689 3880.1.1.2 beta barrels › Glycoside hydrolase family 127 C-terminal domain › Glycoside hydrolase family 127 C-terminal domain › Glycoside hydrolase family 127 C-terminal domain › Glyco_hydro127C 0.51 42.0 3.41e-01 100.0% 77.0%