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MG603697.1__AUG88463.1__VPR_099__00099

Bact-Vir

MG603697.1__AUG88463.1__VPR_099__00099

Identity

Accession:
MG603697 ↗
Kingdom:
phage

Quality

66.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Grimontviridae› Dalianvirus› Vibrio_phage_Vp_R1

TaxID: 2059867

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 42-99
PDB
Domain cluster: rep: MT135025.1__QIW90839.1__GCAPEGMB_00524__00492__D18-71
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gvpA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.73 43.0 3.07e-01 75.9% 21.4%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.62 48.0 3.45e-01 87.9% 86.2%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.61 45.0 3.61e-01 84.5% 40.0%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 47.0 4.17e-01 86.2% 71.3%
3au4A04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 44.0 3.83e-01 81.0% 52.7%
4flnA02 3.20.190.20 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › 0.59 47.0 3.62e-01 93.1% 80.9%
2pt7C01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.59 37.0 3.07e-01 72.4% 33.0%
2rloA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 46.0 3.63e-01 86.2% 72.7%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 37.0 3.61e-01 74.1% 55.2%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.58 39.0 4.14e-01 81.0% 82.0%
1zxtA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 39.0 3.90e-01 79.3% 67.2%
1y13A00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.57 48.0 3.52e-01 94.8% 82.2%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 38.0 3.72e-01 79.3% 62.1%
5k19A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 45.0 2.76e-01 87.9% 26.9%
4z32A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 36.0 3.09e-01 75.9% 39.6%
4fk1A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 48.0 3.46e-01 100.0% 58.8%
1w1hD00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 40.0 3.01e-01 74.1% 62.0%
1faoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 40.0 3.41e-01 77.6% 60.0%
2cduA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 38.0 2.88e-01 72.4% 78.1%
2in5A00 2.40.360.10 Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like 0.54 43.0 3.09e-01 91.4% 80.5%
2codA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 38.0 3.23e-01 74.1% 92.7%
1ye8A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 46.0 3.32e-01 96.6% 59.1%
2re3A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.54 39.0 3.71e-01 77.6% 70.0%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 37.0 3.59e-01 75.9% 63.6%
4bjzA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 45.0 3.33e-01 100.0% 78.0%
3jtzA00 3.30.160.390 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain 0.53 38.0 3.47e-01 75.9% 77.9%
6g6qA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 44.0 3.44e-01 100.0% 89.6%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 39.0 3.38e-01 86.2% 57.4%
6ctzA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 39.0 3.44e-01 82.8% 87.1%
3oyyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 38.0 3.73e-01 79.3% 87.7%
6az1E02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.52 36.0 3.81e-01 72.4% 94.1%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 35.0 3.39e-01 70.7% 64.2%
1whzA00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.51 42.0 3.99e-01 93.1% 79.7%
3kenA00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.51 41.0 2.62e-01 93.1% 72.1%
1aogA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 37.0 3.01e-01 79.3% 94.2%
5kiqA02 3.10.20.890 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.51 35.0 3.36e-01 74.1% 66.7%
3lzhA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 37.0 3.38e-01 84.5% 94.5%
1x05A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 43.0 3.40e-01 100.0% 44.2%
1f44A01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.51 42.0 3.00e-01 96.6% 67.0%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.51 38.0 3.36e-01 86.2% 89.7%
6b4oA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 39.0 3.14e-01 84.5% 94.9%
1f9qD00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 34.0 3.27e-01 75.9% 60.6%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5047206 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.71 60.0 4.43e-01 93.1% 40.0%
5045621 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.68 59.0 4.34e-01 96.6% 38.0%
5059099 241.2.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.67 54.0 4.73e-01 98.3% 59.1%
5014724 295.1.1.51 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › FtsQ_DivIB_C 0.64 52.0 4.45e-01 94.8% 85.0%
4208229 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.63 37.0 3.92e-01 70.7% 66.0%
3939496 5.1.4.500 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sec39 0.63 45.0 2.53e-01 77.6% 14.6%
4172704 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.62 38.0 3.91e-01 75.9% 63.6%
1487666 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.62 38.0 3.92e-01 74.1% 63.6%
3256843 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.62 44.0 3.72e-01 77.6% 50.5%
4026595 719.2.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.61 47.0 4.18e-01 86.2% 98.9%
3995153 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 46.0 3.87e-01 86.2% 64.8%
3912274 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.60 41.0 3.90e-01 72.4% 100.0%
4032637 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.60 38.0 3.97e-01 81.0% 69.1%
3520661 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 49.0 2.90e-01 94.8% 23.2%
3998421 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 42.0 4.09e-01 75.9% 75.4%
3373766 7.1.1.7 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_3 0.59 47.0 3.66e-01 93.1% 82.0%
4950628 3740.1.1.4 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.59 43.0 2.79e-01 79.3% 47.9%
3249313 7.1.1.7 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_3 0.59 46.0 3.58e-01 93.1% 82.0%
3601171 1021.1.1.0 ↗ a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.58 41.0 3.78e-01 81.0% 54.1%
3924808 719.2.1.0 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like 0.58 44.0 4.01e-01 81.0% 90.0%
3276072 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.58 40.0 3.28e-01 72.4% 80.0%
2579116 2.1.1.9 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.58 40.0 3.98e-01 72.4% 82.3%
4976969 2.1.1.9 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.58 40.0 3.70e-01 72.4% 90.7%
3990001 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.58 35.0 3.68e-01 77.6% 66.0%
3808127 7.1.1.7 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_3 0.57 46.0 3.64e-01 93.1% 85.2%
665 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.57 38.0 3.70e-01 79.3% 61.2%
4958385 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.57 35.0 3.88e-01 74.1% 82.5%
4952379 3740.1.1.4 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.56 41.0 2.67e-01 79.3% 17.0%
4043931 2.1.1.9 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.56 39.0 3.90e-01 72.4% 88.3%
4119657 3740.1.1.1 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_N,FrhB_FdhB_C 0.56 42.0 2.72e-01 79.3% 49.6%
5070602 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.56 43.0 3.40e-01 89.7% 83.6%
3447770 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.56 33.0 3.76e-01 74.1% 97.1%
3797728 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 37.0 3.38e-01 70.7% 49.4%
4943272 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 40.0 3.96e-01 75.9% 91.7%
3422531 7.1.1.7 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_3 0.55 41.0 3.81e-01 81.0% 81.3%
4325664 330.7.1.0 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain 0.55 39.0 3.95e-01 89.7% 75.0%
5001380 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 45.0 4.11e-01 93.1% 90.0%
5042477 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 35.0 3.81e-01 84.5% 84.4%
3417244 220.1.1.64 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C1_MyoVII 0.55 37.0 3.26e-01 75.9% 44.2%
4027502 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 42.0 4.07e-01 86.2% 86.2%
3922234 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 46.0 3.73e-01 96.6% 55.7%
3939128 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 42.0 3.48e-01 86.2% 48.2%
3523446 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.54 46.0 3.88e-01 96.6% 64.0%
3645592 719.2.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.54 42.0 3.58e-01 86.2% 91.0%
3218646 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 43.0 4.19e-01 91.4% 87.7%
4944767 101.1.2.883 ↗ alpha arrays › HTH › HTH › winged helix domain › Radical_SAM 0.54 42.0 3.92e-01 87.9% 98.7%
3363360 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.53 46.0 4.08e-01 100.0% 94.1%
3656232 4.1.1.304 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.53 34.0 3.67e-01 79.3% 84.4%
4000029 5.1.4.139 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_2 0.53 45.0 2.84e-01 96.6% 26.2%
4978405 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 40.0 3.19e-01 86.2% 50.7%
3450480 5.1.4.297 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, NBCH_WD40 0.52 43.0 2.84e-01 93.1% 44.1%
4556449 6020.1.1.1 ↗ a+b two layers › Beta domain of DivIB/FtsQ › Beta domain of DivIB/FtsQ › Beta domain of DivIB/FtsQ › FtsQ_DivIB_C 0.51 40.0 3.18e-01 89.7% 74.4%
3493556 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 34.0 2.85e-01 70.7% 44.5%
4940177 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 42.0 3.96e-01 93.1% 82.9%
3938589 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.51 34.0 3.57e-01 84.5% 80.0%
2512682 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.51 32.0 3.30e-01 72.4% 67.3%
3336523 4.1.1.304 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.51 34.0 3.63e-01 84.5% 84.0%
3392529 719.2.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.50 40.0 3.54e-01 91.4% 94.4%
3037102 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 33.0 3.29e-01 84.5% 64.5%
5048050 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 36.0 2.46e-01 84.5% 18.6%
3660755 4.8.1.21 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PTM_DIR17_Tudor 0.50 36.0 3.42e-01 84.5% 62.7%