←Back to structures

MG673519.1__AUM57618.1__phiL_0401__00035

Bact-Vir

MG673519.1__AUM57618.1__phiL_0401__00035

Identity

Accession:
MG673519 ↗
Kingdom:
phage

Quality

69.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mtkvariviridae› Kuravirus› Escherichia_phage_LAMP

TaxID: 2065191

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-52
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.75 49.0 3.84e-01 72.5% 33.0%
3aeiA00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.73 48.0 3.94e-01 72.5% 37.2%
1fxkC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.65 49.0 3.65e-01 82.4% 51.1%
2nmlA00 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.65 49.0 3.95e-01 82.4% 97.0%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 48.0 3.72e-01 82.4% 41.3%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 42.0 3.98e-01 70.6% 60.3%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.63 38.0 3.84e-01 92.2% 58.8%
1xteA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.62 51.0 4.03e-01 98.0% 69.0%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 43.0 3.77e-01 82.4% 46.9%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 38.0 3.72e-01 84.3% 54.2%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 39.0 3.57e-01 100.0% 47.1%
2im9A02 2.30.260.10 Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain 0.61 46.0 3.45e-01 100.0% 30.6%
3nwpA00 3.40.50.1360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 43.0 2.81e-01 76.5% 28.3%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 40.0 3.60e-01 90.2% 47.9%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.59 41.0 4.00e-01 72.5% 68.4%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.59 50.0 4.06e-01 98.0% 79.2%
4hjwA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.59 48.0 2.95e-01 100.0% 95.2%
4xr7F02 1.10.287.3700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 42.0 3.57e-01 78.4% 75.6%
3a54A01 2.40.50.340 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 41.0 3.43e-01 96.1% 43.3%
3mbhA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.58 43.0 2.71e-01 80.4% 34.3%
4l80D00 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.57 41.0 2.51e-01 76.5% 34.9%
1xjkA00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.57 47.0 2.69e-01 96.1% 79.2%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.57 36.0 3.54e-01 90.2% 57.4%
5oomK00 3.90.1180.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L13p; Chain: A; › Ribosomal protein L13 0.57 40.0 2.83e-01 76.5% 59.9%
4n4nB00 3.90.640.100 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › 0.57 40.0 3.95e-01 76.5% 82.1%
1igqB00 2.30.30.150 Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain 0.56 38.0 3.78e-01 98.0% 66.7%
3kxrA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.55 37.0 2.83e-01 70.6% 31.7%
2wdtC02 3.30.1490.420 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 0.55 46.0 3.76e-01 96.1% 92.1%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.55 38.0 3.68e-01 72.5% 75.4%
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.55 39.0 3.87e-01 78.4% 70.9%
3llcA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 47.0 3.05e-01 100.0% 37.5%
1zuuA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 34.0 3.34e-01 98.0% 55.4%
1flcB00 3.90.20.10 Alpha Beta › Alpha-Beta Complex › Hemagglutinin Ectodomain; Chain B › 0.54 46.0 3.25e-01 96.1% 80.2%
1fblA02 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.53 44.0 2.97e-01 100.0% 24.6%
2fgeA01 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.53 41.0 2.67e-01 86.3% 70.9%
4zudA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.53 43.0 2.87e-01 100.0% 59.8%
1kvkA01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.53 42.0 2.94e-01 100.0% 76.5%
2z86D02 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.51 38.0 2.47e-01 82.4% 69.2%
1ybyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 40.0 3.78e-01 90.2% 87.5%
3h74A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.50 40.0 2.66e-01 100.0% 62.2%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5014250 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.79 54.0 4.63e-01 74.5% 46.3%
3712081 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.75 50.0 3.84e-01 72.5% 31.8%
4017372 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.74 49.0 3.72e-01 72.5% 30.4%
3550136 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.74 49.0 3.73e-01 72.5% 30.4%
3593339 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.74 49.0 3.72e-01 72.5% 30.4%
2701125 3146.1.1.1 ↗ a+b complex topology › gH main domain › gH main domain › gH main domain › Herpes_glycop_H 0.74 46.0 2.63e-01 90.2% 6.4%
3701983 304.153.1.0 ↗ a+b two layers › Alpha-beta plaits › Collagenase G catalytic helper subdomain › Collagenase G catalytic helper subdomain 0.73 55.0 3.77e-01 82.4% 46.9%
3705145 310.3.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.72 54.0 3.71e-01 82.4% 45.6%
3579472 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.71 49.0 3.59e-01 72.5% 28.5%
5023652 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.71 52.0 3.48e-01 78.4% 21.6%
4004145 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.69 56.0 3.68e-01 90.2% 37.2%
4078006 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.69 48.0 3.83e-01 74.5% 40.0%
3940159 3767.1.1.2 ↗ a+b two layers › Giardia Dicer N-terminal domain › Giardia Dicer N-terminal domain › Giardia Dicer N-terminal domain › Dicer_platform 0.66 56.0 3.88e-01 98.0% 61.6%
3829036 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.66 38.0 3.18e-01 80.4% 30.1%
4977598 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.66 50.0 3.86e-01 82.4% 40.9%
None — 0.65 47.0 2.87e-01 78.4% 56.3%
4083451 192.2.1.20 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ASNSD1-SEP 0.65 48.0 4.12e-01 78.4% 50.0%
4987043 2002.1.1.73 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT 0.64 45.0 2.76e-01 74.5% 42.6%
4478971 4.1.1.174 ↗ beta barrels › SH3 › SH3 › SH3 › DUF951 0.63 45.0 4.19e-01 100.0% 60.0%
4946165 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 41.0 4.06e-01 96.1% 65.5%
3574733 109.3.1.162 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 0.60 42.0 2.72e-01 76.5% 30.4%
5041606 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.59 48.0 4.51e-01 94.1% 87.7%
4066623 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.58 38.0 3.70e-01 98.0% 58.3%
3429682 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 45.0 4.10e-01 100.0% 61.3%
3896583 109.4.1.198 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 0.58 40.0 2.87e-01 76.5% 46.9%
5058374 7513.1.1.1 ↗ a/b three-layered sandwiches › CofD-like › CofD-like › CofD-like › CofD 0.57 44.0 2.69e-01 92.2% 66.3%
4884617 4001.1.1.4 ↗ a+b duplicates or obligate multimers › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › Cullin_AB 0.57 46.0 3.84e-01 94.1% 90.6%
4957409 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 36.0 3.64e-01 98.0% 64.0%
3174487 2498.5.1.0 ↗ mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like 0.56 41.0 2.50e-01 78.4% 28.5%
2675169 2490.2.1.1 ↗ a/b three-layered sandwiches › Ribosomal protein L13/L15p/L18e/L32e › Ribosomal protein L13 and L16-A › Ribosomal protein L13 and L16-A › Ribosomal_L13 0.56 39.0 2.70e-01 74.5% 57.5%
3689915 109.4.1.1227 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NPHP3_N 0.56 47.0 2.68e-01 98.0% 52.2%
4043601 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.56 39.0 3.66e-01 74.5% 86.2%
3948516 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.56 39.0 3.64e-01 98.0% 58.5%
391008 2003.6.1.5 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Phos_pyr_kin 0.56 45.0 2.83e-01 90.2% 88.9%
4024861 2003.1.5.82 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.55 44.0 2.85e-01 96.1% 37.8%
4168836 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.54 44.0 4.04e-01 94.1% 88.6%
4059146 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.54 43.0 4.01e-01 90.2% 89.2%
4051852 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.54 41.0 3.82e-01 84.3% 87.7%
3573556 2003.1.5.145 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › RLMG_N 0.54 39.0 2.59e-01 78.4% 59.6%
4425795 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.53 42.0 3.94e-01 90.2% 90.8%
4579534 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.53 42.0 3.95e-01 92.2% 89.2%
3661784 206.1.1.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.52 43.0 2.69e-01 98.0% 50.5%
5079042 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.52 37.0 2.67e-01 78.4% 39.4%
4050524 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.52 43.0 4.03e-01 96.1% 89.2%
3424116 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.52 46.0 3.47e-01 100.0% 58.3%
4252940 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.52 44.0 4.11e-01 100.0% 90.8%
4184764 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.51 40.0 3.80e-01 90.2% 89.2%
3446432 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 41.0 2.61e-01 96.1% 54.7%
4141047 593.1.1.0 ↗ alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like 0.51 41.0 2.70e-01 96.1% 95.4%
4032291 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.51 40.0 3.82e-01 94.1% 90.8%