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MG676223.1__AVR75850.1__ValSw33_26__00026

Bact-Vir

MG676223.1__AVR75850.1__ValSw33_26__00026

Identity

Accession:
MG676223 ↗
Kingdom:
phage

Quality

76.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-43
PDB
Domain cluster: representative
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3zq5A03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.74 54.0 3.74e-01 83.3% 25.5%
6lxgA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.73 61.0 5.23e-01 100.0% 100.0%
2vd3A03 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.73 62.0 5.22e-01 100.0% 87.8%
4lvnP00 3.30.70.2380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.71 57.0 4.81e-01 100.0% 90.1%
1mg7A01 3.30.70.1000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Switch protein XOL-1, GHMP-like 0.70 57.0 3.89e-01 100.0% 75.4%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.70 58.0 4.61e-01 100.0% 57.3%
1nrjA00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.70 54.0 3.72e-01 85.7% 25.9%
2f1fA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.68 57.0 4.78e-01 100.0% 92.4%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.68 60.0 4.63e-01 100.0% 82.6%
2cyyA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.68 56.0 4.50e-01 100.0% 70.5%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.67 54.0 5.23e-01 100.0% 84.0%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.67 56.0 4.25e-01 100.0% 55.0%
3mfiA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.67 54.0 4.11e-01 100.0% 49.6%
5ja1B00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.66 45.0 3.92e-01 100.0% 45.5%
2gnxA02 3.30.450.240 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.66 49.0 3.76e-01 85.7% 33.0%
2il5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.66 48.0 3.34e-01 83.3% 87.0%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.66 54.0 3.75e-01 100.0% 29.3%
1bebA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.66 53.0 3.76e-01 100.0% 84.0%
3in6A02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 56.0 4.11e-01 100.0% 42.7%
1e3hA03 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.66 47.0 2.97e-01 76.2% 45.1%
3jtnB00 3.30.70.1950 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 44.0 3.58e-01 76.2% 33.3%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.64 50.0 3.96e-01 100.0% 44.1%
2r7eB03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.62 50.0 3.55e-01 100.0% 54.8%
3ll3B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.62 48.0 3.16e-01 100.0% 31.0%
2xqyA03 2.60.40.3190 Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain 0.62 50.0 3.65e-01 100.0% 34.6%
3bn6A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.62 50.0 3.49e-01 100.0% 53.8%
3aqoA01 3.30.70.3400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 49.0 4.19e-01 100.0% 95.0%
4uzgA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 52.0 3.57e-01 100.0% 69.9%
4gdxA02 1.10.246.130 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain 0.61 47.0 3.50e-01 85.7% 54.1%
2h5eA03 3.30.70.3280 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptide chain release factor 3, domain III 0.61 47.0 3.53e-01 100.0% 46.7%
2orzA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 48.0 3.42e-01 100.0% 55.2%
2pnqA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.60 47.0 2.84e-01 100.0% 20.4%
2d93A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 48.0 3.37e-01 100.0% 28.4%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.60 51.0 3.72e-01 100.0% 42.5%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 53.0 4.54e-01 100.0% 68.2%
3o0lA00 2.60.40.3230 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 49.0 3.75e-01 100.0% 46.8%
2o3iA01 3.40.1610.10 Alpha Beta › 3-Layer(aba) Sandwich › CV3147-like fold › CV3147-like domain 0.59 47.0 3.00e-01 95.2% 69.5%
1dyqA02 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.59 45.0 3.35e-01 97.6% 73.2%
3wqbA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 48.0 3.34e-01 100.0% 38.0%
7ct1A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 48.0 3.98e-01 100.0% 80.0%
4nlcA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.57 49.0 3.04e-01 100.0% 30.9%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 49.0 4.26e-01 100.0% 69.7%
3b34A04 2.60.40.1840 Mainly Beta › Sandwich › Immunoglobulin-like › Aminopeptidase N, middle-beta domain 0.57 45.0 3.58e-01 100.0% 47.1%
2gy5A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 44.0 3.48e-01 92.9% 71.7%
2iciA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.56 43.0 3.18e-01 97.6% 77.9%
3m62B00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 45.0 3.94e-01 100.0% 86.1%
2qqrA02 3.10.330.70 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.55 45.0 4.24e-01 97.6% 100.0%
1wh2A01 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.53 41.0 3.75e-01 100.0% 62.3%
2wadA02 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.53 43.0 3.15e-01 100.0% 26.4%
3orqA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.53 41.0 3.79e-01 100.0% 65.1%
3v67A01 3.30.450.210 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Two-component sensor protein CpxA, periplasmic domain 0.53 42.0 2.97e-01 85.7% 38.8%
3cz8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.53 41.0 3.92e-01 100.0% 98.2%
4id8A00 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 40.0 3.69e-01 97.6% 96.9%
4jzjC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 42.0 3.31e-01 100.0% 46.2%
3isxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.50 39.0 3.23e-01 95.2% 68.5%
2qsdB02 3.50.100.10 Alpha Beta › 3-Layer(bba) Sandwich › protein il1583 fold › protein il1583 domain 0.50 38.0 3.29e-01 100.0% 47.4%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3639608 304.4.1.53 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › R1_ABCA1 0.83 72.0 5.96e-01 100.0% 100.0%
3799886 304.8.1.49 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › R1_ABCA1 0.80 67.0 5.80e-01 100.0% 100.0%
3390313 304.4.1.53 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › R1_ABCA1 0.78 66.0 5.36e-01 100.0% 88.2%
3402258 304.8.1.49 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › R1_ABCA1 0.78 67.0 5.13e-01 100.0% 93.0%
3598887 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.78 65.0 5.50e-01 100.0% 93.3%
3591488 304.163.1.1 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › R1_ABCA1 0.78 66.0 5.53e-01 100.0% 90.7%
3250477 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.77 59.0 4.29e-01 85.7% 31.1%
3277566 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.77 65.0 5.48e-01 100.0% 92.0%
3408002 304.8.1.49 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › R1_ABCA1 0.76 64.0 4.82e-01 100.0% 73.6%
3216210 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.76 64.0 6.16e-01 100.0% 86.0%
3715563 304.163.1.1 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › R1_ABCA1 0.76 63.0 5.48e-01 100.0% 97.1%
3397248 304.8.1.49 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › R1_ABCA1 0.76 64.0 5.00e-01 100.0% 93.7%
5030904 304.4.1.1 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg 0.75 65.0 5.51e-01 100.0% 95.7%
3710757 304.163.1.1 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › R1_ABCA1 0.75 63.0 5.45e-01 100.0% 97.1%
3859647 304.163.1.1 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › R1_ABCA1 0.75 62.0 5.38e-01 100.0% 98.6%
3479364 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.74 63.0 5.19e-01 100.0% 92.5%
5033617 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.74 55.0 3.99e-01 83.3% 30.4%
4113243 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.74 56.0 3.89e-01 85.7% 29.3%
3832606 304.8.1.49 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › R1_ABCA1 0.74 60.0 4.24e-01 100.0% 97.3%
3279061 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.73 61.0 5.28e-01 100.0% 94.3%
4006107 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.72 58.0 4.99e-01 100.0% 92.0%
3829032 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.72 59.0 4.95e-01 100.0% 86.3%
4021062 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.72 61.0 5.50e-01 100.0% 95.0%
5024071 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.71 50.0 3.73e-01 83.3% 28.7%
4946413 2010.1.1.1 a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV 0.70 54.0 3.73e-01 88.1% 58.1%
4944201 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.69 55.0 4.88e-01 100.0% 100.0%
3975705 3115.6.1.0 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon 0.69 54.0 5.24e-01 100.0% 78.0%
5012895 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.69 60.0 5.50e-01 100.0% 81.8%
5025086 101.1.11.0 alpha arrays › HTH › HTH › Ribbon-helix-helix 0.68 59.0 5.43e-01 100.0% 94.5%
4961379 4176.1.1.2 a/b three-layered sandwiches › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › S-Me-THD_N 0.68 53.0 3.51e-01 100.0% 19.5%
4007508 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.68 54.0 5.18e-01 100.0% 78.0%
5009755 4176.1.1.2 a/b three-layered sandwiches › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › S-Me-THD_N 0.68 54.0 3.55e-01 100.0% 19.5%
3721040 4176.1.1.2 a/b three-layered sandwiches › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › S-Me-THD_N 0.67 53.0 3.43e-01 100.0% 17.6%
4004704 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.67 52.0 5.15e-01 100.0% 86.7%
5081134 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.67 56.0 5.07e-01 100.0% 73.3%
5053654 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.66 48.0 3.62e-01 85.7% 33.3%
3968122 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.66 55.0 5.45e-01 100.0% 91.1%
3969006 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.65 53.0 5.25e-01 100.0% 95.6%
4028834 223.2.1.7 a+b three layers › Profilin-like › profilin-like › profilin-like › SRP-alpha_N 0.64 49.0 3.57e-01 85.7% 40.8%
3991455 822.2.1.1 a+b two layers › GYF/BRK domain-like › BRK domain-like › BRK domain-like › BRK 0.63 50.0 4.63e-01 100.0% 69.1%
4089566 3857.1.1.1 beta sandwiches › Head-binding domain of phage P22 tailspike protein › Head-binding domain of phage P22 tailspike protein › Head-binding domain of phage P22 tailspike protein › Head_binding 0.63 46.0 3.61e-01 100.0% 35.8%
5082483 4038.1.1.1 alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal 0.63 49.0 3.35e-01 100.0% 83.6%
5075866 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.62 49.0 4.23e-01 100.0% 88.7%
3959955 304.163.1.3 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › PF31118 0.60 46.0 4.58e-01 100.0% 88.9%
4946840 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 44.0 3.36e-01 83.3% 32.2%
3313678 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 45.0 3.24e-01 88.1% 45.7%
1879221 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.59 43.0 4.03e-01 85.7% 100.0%
3783880 376.1.3.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.59 44.0 3.55e-01 92.9% 48.6%
5047600 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.59 43.0 3.15e-01 85.7% 73.3%
4959407 304.163.1.3 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › PF31118 0.58 44.0 4.32e-01 100.0% 78.0%
3475783 822.2.1.1 a+b two layers › GYF/BRK domain-like › BRK domain-like › BRK domain-like › BRK 0.58 42.0 4.28e-01 95.2% 100.0%
None 0.56 46.0 4.11e-01 100.0% 95.5%
3187588 66.1.1.1 beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.56 42.0 2.98e-01 100.0% 25.9%
3430287 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.54 40.0 2.44e-01 83.3% 11.8%
4067935 275.1.1.0 a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 0.52 40.0 3.98e-01 88.1% 80.0%
1293083 205.1.1.20 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_15 0.51 39.0 3.60e-01 97.6% 93.9%
3555970 12.5.1.1 beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5 0.51 42.0 2.90e-01 100.0% 35.3%
4023426 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.50 38.0 3.25e-01 83.3% 61.4%