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MG676224.1__AVR76000.1__AhSzq1_107__00107
Bact-VirMG676224.1__AVR76000.1__AhSzq1_107__00107
Identity
- Accession:
- MG676224 ↗
- Kingdom:
- phage
Quality
91.3
mean pLDDT
Taxonomy
TaxID: 2138298
Cluster
View cluster (6 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 2-103
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3n2oA02 | 3.20.20.10 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase | 0.64 | 51.0 | 3.73e-01 | 85.3% | 35.5% |
| 7e6iA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.62 | 48.0 | 4.05e-01 | 82.4% | 77.1% |
| 3hurA02 | 3.20.20.10 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase | 0.61 | 47.0 | 3.71e-01 | 84.3% | 51.6% |
| 1tjyA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.60 | 45.0 | 4.00e-01 | 88.2% | 54.2% |
| 5kc8A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.59 | 47.0 | 4.05e-01 | 86.3% | 85.2% |
| 3icoA00 | 3.40.50.1360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 46.0 | 3.62e-01 | 90.2% | 49.6% |
| 1ye8A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 46.0 | 3.98e-01 | 89.2% | 65.5% |
| 1ispA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.57 | 47.0 | 3.96e-01 | 92.2% | 77.1% |
| 3c3kA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.57 | 41.0 | 3.74e-01 | 85.3% | 56.5% |
| 4kq9A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 44.0 | 3.62e-01 | 87.3% | 56.0% |
| 6feaA01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.55 | 43.0 | 3.56e-01 | 92.2% | 45.1% |
| 3ua3A02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 43.0 | 3.68e-01 | 85.3% | 61.8% |
| 4y9tA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.55 | 44.0 | 3.74e-01 | 89.2% | 51.1% |
| 1gcaA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.55 | 41.0 | 3.59e-01 | 87.3% | 50.9% |
| 3h5lA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.54 | 44.0 | 3.78e-01 | 89.2% | 79.4% |
| 2bpoA04 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.53 | 41.0 | 3.58e-01 | 83.3% | 74.7% |
| 3oziB00 | 3.40.50.10140 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Toll/interleukin-1 receptor homology (TIR) domain | 0.53 | 42.0 | 3.58e-01 | 84.3% | 70.8% |
| 3o3mD03 | 3.40.50.11900 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 39.0 | 3.53e-01 | 94.1% | 54.8% |
| 3pukA01 | 3.40.50.2060 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Sec1/Munc18 (SM) protein, domain 1 | 0.53 | 38.0 | 3.51e-01 | 74.5% | 75.2% |
| 3ssmC02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 40.0 | 3.27e-01 | 86.3% | 40.8% |
| 2xdqA02 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.51 | 38.0 | 3.51e-01 | 92.2% | 60.3% |
| 4fr2A01 | 3.40.50.1970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 38.0 | 3.13e-01 | 78.4% | 72.3% |
| 2qy6A01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 43.0 | 3.32e-01 | 94.1% | 62.1% |
| 3hbaA01 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.50 | 37.0 | 3.04e-01 | 77.5% | 49.7% |
| 3k1tA02 | 3.40.50.11280 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glutamate-cysteine ligase, N-terminal domain | 0.50 | 37.0 | 3.41e-01 | 79.4% | 72.7% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3944037 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.85 | 78.0 | 6.67e-01 | 98.0% | 66.2% |
| 3604410 | 2004.1.1.293 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 | 0.85 | 79.0 | 6.43e-01 | 100.0% | 62.2% |
| 4946106 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.81 | 73.0 | 5.00e-01 | 97.1% | 31.2% |
| 4955492 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.80 | 65.0 | 5.13e-01 | 99.0% | 44.0% |
| 3957668 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.79 | 66.0 | 6.66e-01 | 91.2% | 90.0% |
| 5069284 | 314.1.1.2 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b | 0.64 | 45.0 | 3.21e-01 | 72.5% | 34.2% |
| 3408495 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.64 | 45.0 | 3.73e-01 | 73.5% | 54.6% |
| 3396528 | 2007.1.2.31 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › LBD_receptor | 0.61 | 52.0 | 4.27e-01 | 93.1% | 65.4% |
| 3644907 | 7590.1.1.2 ↗ | a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Piwi | 0.59 | 44.0 | 4.44e-01 | 88.2% | 77.1% |
| 4017832 | 2004.1.1.366 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NPHP3_N | 0.59 | 49.0 | 4.87e-01 | 89.2% | 87.6% |
| 4182585 | 2007.1.16.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Iron-sulphur enzyme Dph2 › Diphthamide_syn | 0.58 | 35.0 | 3.49e-01 | 75.5% | 56.2% |
| 3718004 | 2003.1.5.79 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 | 0.58 | 49.0 | 3.63e-01 | 92.2% | 90.5% |
| 4648357 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.58 | 42.0 | 2.44e-01 | 77.5% | 21.0% |
| 1253195 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.58 | 41.0 | 3.77e-01 | 78.4% | 55.1% |
| 3595022 | 7585.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins | 0.57 | 40.0 | 3.65e-01 | 73.5% | 75.0% |
| 4001476 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.56 | 46.0 | 3.76e-01 | 91.2% | 68.0% |
| 3342058 | 7581.1.1.16 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › FAE1_CUT1_RppA | 0.56 | 38.0 | 3.37e-01 | 70.6% | 76.9% |
| 4962575 | 3008.1.1.0 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.56 | 36.0 | 3.86e-01 | 86.3% | 76.1% |
| 3715211 | 7585.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins | 0.56 | 39.0 | 3.52e-01 | 73.5% | 71.7% |
| 4561912 | 2007.1.14.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Oxidored_nitro | 0.55 | 44.0 | 4.02e-01 | 92.2% | 65.2% |
| 3562065 | 7516.1.1.107 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_7C, CHGN | 0.55 | 40.0 | 2.82e-01 | 85.3% | 24.0% |
| 4014799 | 2007.1.7.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Rossmann-like domain in dehydroquinate synthase-like enzymes | 0.55 | 40.0 | 3.41e-01 | 77.5% | 73.5% |
| 3814933 | 2007.1.16.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Iron-sulphur enzyme Dph2 | 0.54 | 40.0 | 3.54e-01 | 87.3% | 53.3% |
| 3952398 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.54 | 44.0 | 3.24e-01 | 92.2% | 54.0% |
| 3389355 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.54 | 45.0 | 3.81e-01 | 92.2% | 79.4% |
| 4887824 | 2007.1.14.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Oxidored_nitro | 0.53 | 40.0 | 3.60e-01 | 92.2% | 54.2% |
| 4969138 | 2005.1.1.11 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 | 0.53 | 44.0 | 3.24e-01 | 94.1% | 47.9% |
| 4032206 | 2007.1.7.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Rossmann-like domain in dehydroquinate synthase-like enzymes › Fe-ADH | 0.52 | 40.0 | 3.33e-01 | 82.4% | 64.9% |
| 4946383 | 2004.1.1.233 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cas3-like_C_2 | 0.52 | 44.0 | 3.00e-01 | 98.0% | 32.9% |
| 4900637 | 2007.1.14.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Oxidored_nitro | 0.52 | 41.0 | 3.83e-01 | 92.2% | 67.2% |
| 161181 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.52 | 40.0 | 3.79e-01 | 83.3% | 82.8% |
| 3389590 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.52 | 43.0 | 3.59e-01 | 93.1% | 64.9% |
| 3791564 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.51 | 38.0 | 3.41e-01 | 77.5% | 73.6% |
| 4575108 | 7512.1.1.15 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyphos_transf | 0.51 | 38.0 | 3.11e-01 | 81.4% | 66.0% |
| 3590576 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.50 | 35.0 | 3.43e-01 | 71.6% | 99.1% |