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MG676466.1__AUG88577.1__X__00066
Bact-VirMG676466.1__AUG88577.1__X__00066
Identity
- Accession:
- MG676466 ↗
- Kingdom:
- phage
Quality
78.9
mean pLDDT
Taxonomy
TaxID: 2060947
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-63
Domain cluster:
rep: MG592484.1__AUR88234.1__NVP1111A_40__00040__D3-58
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7wq5A01 | 3.30.730.10 | Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › AP2/ERF domain | 0.71 | 44.0 | 4.57e-01 | 70.5% | 67.2% |
| 2cyyA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.65 | 52.0 | 4.59e-01 | 91.8% | 81.1% |
| 2dbbA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.64 | 52.0 | 4.58e-01 | 91.8% | 84.9% |
| 1t4aA00 | 3.30.1280.10 | Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS | 0.64 | 47.0 | 4.48e-01 | 85.2% | 98.7% |
| 2bopA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.63 | 52.0 | 4.68e-01 | 91.8% | 100.0% |
| 1jh6A00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.63 | 54.0 | 3.93e-01 | 100.0% | 91.7% |
| 1m0wA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.62 | 53.0 | 4.45e-01 | 100.0% | 55.6% |
| 2o8rB02 | 3.30.1840.10 | Alpha Beta › 2-Layer Sandwich › polyphosphate kinase like › Polyphosphate kinase middle domain | 0.62 | 53.0 | 4.02e-01 | 100.0% | 53.5% |
| 2hgsA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.61 | 53.0 | 4.39e-01 | 100.0% | 57.7% |
| 2atpD00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 52.0 | 4.29e-01 | 100.0% | 68.8% |
| 2lxxA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.59 | 49.0 | 3.84e-01 | 100.0% | 47.4% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.59 | 52.0 | 4.56e-01 | 100.0% | 93.5% |
| 4gucA00 | 2.60.40.3720 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 51.0 | 4.20e-01 | 100.0% | 53.0% |
| 1mw7A02 | 3.30.70.980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain | 0.58 | 40.0 | 3.66e-01 | 83.6% | 51.7% |
| 2jwyA01 | 2.60.40.1620 | Mainly Beta › Sandwich › Immunoglobulin-like › Lipoprotein YajI-like | 0.58 | 45.0 | 3.61e-01 | 88.5% | 46.7% |
| 1tljB00 | 3.30.1960.10 | Alpha Beta › 2-Layer Sandwich › SSo0622-like fold › tRNA wybutosine-synthesizing-like | 0.58 | 49.0 | 3.55e-01 | 100.0% | 52.7% |
| 3znuA00 | 3.30.70.1060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel | 0.58 | 46.0 | 4.07e-01 | 91.8% | 93.6% |
| 3r5dA01 | 3.30.70.2010 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 46.0 | 3.81e-01 | 96.7% | 74.4% |
| 2qyxA02 | 3.30.70.1360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › mj0159-like | 0.57 | 48.0 | 4.03e-01 | 100.0% | 82.3% |
| 2mraA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.56 | 47.0 | 3.93e-01 | 100.0% | 83.8% |
| 4geiA00 | 2.60.40.640 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 48.0 | 3.75e-01 | 100.0% | 66.7% |
| 1g4mA01 | 2.60.40.840 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 49.0 | 3.59e-01 | 100.0% | 65.5% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.56 | 48.0 | 4.24e-01 | 100.0% | 91.5% |
| 6kryA01 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.55 | 45.0 | 3.58e-01 | 96.7% | 50.0% |
| 3holA01 | 2.40.128.250 | Mainly Beta › Beta Barrel › Lipocalin › | 0.54 | 40.0 | 3.72e-01 | 85.2% | 97.6% |
| 4njcA00 | 3.10.20.730 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like | 0.53 | 41.0 | 4.18e-01 | 90.2% | 88.3% |
| 1kshB00 | 2.70.50.40 | Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › GMP phosphodiesterase, delta subunit | 0.53 | 46.0 | 3.53e-01 | 100.0% | 43.7% |
| 3bf5A02 | 2.20.150.10 | Mainly Beta › Single Sheet › putative 5-dehydro-2- deoxygluconokinase like fold › putative 5-dehydro-2- deoxygluconokinase | 0.53 | 35.0 | 3.98e-01 | 100.0% | 97.7% |
| 8b38A01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 44.0 | 3.09e-01 | 100.0% | 46.0% |
| 2atzA00 | 3.90.920.20 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › HP0184-like | 0.52 | 44.0 | 3.24e-01 | 98.4% | 51.1% |
| 4g7xB00 | 3.30.1150.10 | Alpha Beta › 2-Layer Sandwich › Fusion Protein Consisting Of Minor Coat Protein, Glycine Rich Linker, Tola, And A His Tag; Chain: A; Domain 2 › | 0.52 | 44.0 | 3.65e-01 | 91.8% | 62.7% |
| 1darA05 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 34.0 | 3.13e-01 | 88.5% | 48.3% |
| 1h3dA03 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 41.0 | 4.01e-01 | 90.2% | 98.5% |
| 2hdeA01 | 3.10.20.550 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › ASAP complex, SAP18 subunit | 0.51 | 40.0 | 3.32e-01 | 90.2% | 48.0% |
| 2hjqA01 | 3.40.5.20 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › YqbF domain | 0.51 | 36.0 | 3.96e-01 | 83.6% | 100.0% |
| 3hm2A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 42.0 | 3.19e-01 | 98.4% | 35.1% |
| 1lvbA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.51 | 39.0 | 3.44e-01 | 100.0% | 52.8% |
| 6dgiA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.51 | 43.0 | 3.37e-01 | 100.0% | 63.2% |
| 5vqfD01 | 2.60.120.970 | Mainly Beta › Sandwich › Jelly Rolls › | 0.50 | 44.0 | 3.00e-01 | 100.0% | 35.8% |
| 4d0qA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.50 | 40.0 | 3.08e-01 | 95.1% | 62.7% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4032409 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.77 | 69.0 | 6.48e-01 | 100.0% | 93.3% |
| 4967498 | 3110.1.1.0 ↗ | a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain | 0.76 | 64.0 | 4.11e-01 | 100.0% | 20.4% |
| 3705968 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.70 | 62.0 | 4.70e-01 | 100.0% | 51.0% |
| 3585568 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.69 | 51.0 | 3.70e-01 | 88.5% | 28.2% |
| 4000011 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.68 | 59.0 | 5.02e-01 | 100.0% | 89.5% |
| 3689024 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.68 | 55.0 | 4.40e-01 | 93.4% | 44.6% |
| 3795522 | 11.1.1.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N | 0.66 | 58.0 | 4.52e-01 | 100.0% | 67.4% |
| 3623120 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.66 | 57.0 | 4.35e-01 | 100.0% | 62.7% |
| 3352760 | 321.1.1.1 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › Gln-synt_C | 0.66 | 56.0 | 3.55e-01 | 100.0% | 62.9% |
| 5070847 | 304.4.1.1 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg | 0.65 | 53.0 | 4.92e-01 | 91.8% | 96.2% |
| 3397468 | 11.1.1.822 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF229 | 0.64 | 50.0 | 4.28e-01 | 100.0% | 51.4% |
| 5053201 | 304.4.1.1 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg | 0.64 | 52.0 | 4.62e-01 | 91.8% | 84.4% |
| 5061537 | 871.1.1.1 ↗ | a+b two layers › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › TYW3 | 0.64 | 54.0 | 3.87e-01 | 100.0% | 54.4% |
| 3722266 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.63 | 49.0 | 4.02e-01 | 91.8% | 44.0% |
| 4144303 | 11.1.1.3 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig | 0.62 | 54.0 | 4.17e-01 | 100.0% | 42.1% |
| 4964337 | 3115.5.1.1 ↗ | a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB | 0.62 | 47.0 | 4.90e-01 | 93.4% | 96.4% |
| 4088630 | 206.1.3.19 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Dala_Dala_lig_C | 0.61 | 53.0 | 3.67e-01 | 100.0% | 41.9% |
| 3925634 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.60 | 46.0 | 4.49e-01 | 86.9% | 95.7% |
| 3520635 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 49.0 | 3.63e-01 | 100.0% | 41.7% |
| 4982909 | 871.1.1.1 ↗ | a+b two layers › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › TYW3 | 0.58 | 48.0 | 3.55e-01 | 100.0% | 51.9% |
| 4030871 | 3115.6.1.1 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › RpoY | 0.57 | 47.0 | 4.55e-01 | 91.8% | 80.0% |
| 4962335 | 3115.5.1.1 ↗ | a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB | 0.57 | 44.0 | 4.37e-01 | 95.1% | 84.6% |
| 4408649 | 2484.1.1.41 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK | 0.55 | 47.0 | 3.29e-01 | 100.0% | 72.4% |
| 1503409 | 220.3.1.1 ↗ | beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Rhabdo_glycop | 0.53 | 44.0 | 3.59e-01 | 100.0% | 91.7% |
| 3472190 | 2492.1.1.4 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.53 | 45.0 | 2.97e-01 | 100.0% | 35.1% |
| 3679804 | 207.1.1.365 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_8, Island, LRR_14 | 0.53 | 40.0 | 2.41e-01 | 93.4% | 10.4% |
| 3788812 | 304.114.1.6 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain › DNA_pol_B_exo1 | 0.53 | 43.0 | 3.02e-01 | 100.0% | 77.9% |
| 5000758 | 1118.1.1.1 ↗ | a+b complex topology › Anchorless fibronectin/fibrinogen binding protein C-terminal domain › Anchorless fibronectin/fibrinogen binding protein C-terminal domain › Anchorless fibronectin/fibrinogen binding protein C-terminal domain › NFACT-R_1 | 0.53 | 43.0 | 3.12e-01 | 100.0% | 38.6% |
| 4956897 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.52 | 43.0 | 3.99e-01 | 100.0% | 71.2% |
| 4960680 | 223.1.1.3 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF | 0.51 | 36.0 | 2.72e-01 | 75.4% | 34.7% |
| 3640855 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.51 | 42.0 | 3.73e-01 | 100.0% | 69.0% |
| 3803932 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.51 | 42.0 | 3.63e-01 | 100.0% | 92.7% |
| 4937773 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.50 | 38.0 | 3.91e-01 | 88.5% | 94.8% |
| 4939739 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.50 | 37.0 | 3.77e-01 | 86.9% | 96.6% |