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MG696115.1__AUM58679.1__phiP47_051__00051

Bact-Vir

MG696115.1__AUM58679.1__phiP47_051__00051

Identity

Accession:
MG696115 ↗
Kingdom:
phage

Quality

82.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-64
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13269.12 best DUF4060 32.2 1.40e-07 96.8% 68.9%
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.73 59.0 5.37e-01 88.9% 70.2%
1zhhB01 3.30.450.220 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › LuxQ periplasmic domain, N-terminal subdomain 0.67 59.0 4.45e-01 100.0% 69.4%
3hi2B00 3.30.2310.40 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › 0.67 60.0 5.20e-01 100.0% 78.4%
2jheA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.67 58.0 4.92e-01 100.0% 73.1%
3ilvA01 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.66 46.0 3.06e-01 73.0% 19.0%
2r41A00 3.10.450.150 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein 0.66 56.0 4.88e-01 100.0% 89.3%
1o9aA01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.66 39.0 4.37e-01 71.4% 81.8%
3fc7A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.65 57.0 4.95e-01 100.0% 89.0%
1bf5A04 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.65 45.0 3.75e-01 73.0% 46.9%
5dynA01 3.40.50.11970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.65 45.0 3.83e-01 73.0% 47.2%
1f98A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.64 55.0 4.51e-01 100.0% 73.6%
6l4lA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.63 57.0 4.41e-01 100.0% 99.3%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 37.0 3.15e-01 93.7% 37.6%
1tkjA00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.58 44.0 2.90e-01 82.5% 80.1%
5wceA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.57 43.0 3.34e-01 92.1% 38.8%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.57 48.0 3.93e-01 95.2% 87.5%
3holA03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.56 49.0 4.41e-01 100.0% 78.7%
1zc1A02 3.10.330.10 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.56 45.0 4.33e-01 95.2% 93.5%
3q0xA01 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.55 40.0 3.04e-01 77.8% 42.6%
2bbhA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.55 51.0 3.76e-01 100.0% 53.0%
2qm4A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.55 43.0 3.39e-01 88.9% 86.0%
2rqlA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.54 40.0 3.60e-01 82.5% 84.2%
5gvcB01 3.40.50.140 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 44.0 3.19e-01 100.0% 33.7%
2p25A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 41.0 3.35e-01 100.0% 43.7%
6bu2A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 43.0 3.24e-01 100.0% 36.7%
4l0mA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.53 44.0 3.12e-01 100.0% 94.9%
3oa4A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 41.0 3.23e-01 100.0% 39.8%
4egwA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.53 48.0 3.72e-01 100.0% 59.5%
2qh0A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 41.0 3.25e-01 100.0% 41.9%
3nm6B00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.52 43.0 3.06e-01 100.0% 93.9%
2qzbA00 2.60.460.10 Mainly Beta › Sandwich › protein yfey like fold › protein yfey like domain 0.52 42.0 3.31e-01 93.7% 51.0%
2pmaA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.51 39.0 3.29e-01 88.9% 92.6%
2jhnA01 3.30.310.20 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain 0.51 45.0 3.67e-01 96.8% 55.8%
3gm5A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.50 45.0 3.39e-01 100.0% 43.7%
2r11D00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 42.0 2.71e-01 92.1% 70.5%
4akrA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.50 41.0 3.31e-01 100.0% 78.2%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3623169 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.76 51.0 4.31e-01 73.0% 41.9%
4655950 274.1.1.4 a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSI 0.75 61.0 5.01e-01 88.9% 53.0%
355233 274.1.1.4 a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSI 0.75 61.0 5.65e-01 88.9% 77.5%
3201338 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.73 65.0 4.38e-01 100.0% 75.3%
4945424 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.72 64.0 5.01e-01 98.4% 57.7%
5033631 2011.2.1.1 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PNP_UDP_1 0.72 50.0 3.24e-01 100.0% 18.1%
3245433 207.1.1.52 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.70 49.0 3.04e-01 100.0% 14.9%
3720034 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.69 60.0 4.63e-01 100.0% 64.8%
4952182 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.68 59.0 4.90e-01 96.8% 91.8%
4943859 2011.2.1.1 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PNP_UDP_1 0.68 48.0 3.08e-01 100.0% 17.5%
3838516 246.1.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase 0.67 46.0 3.06e-01 73.0% 19.2%
170126 223.1.1.16 a+b three layers › Profilin-like › sensor domains › sensor domains › LuxQ-periplasm 0.67 60.0 4.09e-01 100.0% 47.5%
4994079 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.66 59.0 5.58e-01 100.0% 96.0%
3386772 246.1.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase 0.66 46.0 3.04e-01 73.0% 19.8%
4973549 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.66 58.0 4.63e-01 100.0% 68.5%
4463632 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.66 57.0 5.15e-01 100.0% 93.3%
4951490 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.65 57.0 4.97e-01 100.0% 86.0%
3207613 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.65 57.0 4.25e-01 100.0% 85.3%
3715846 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.65 57.0 4.31e-01 98.4% 74.7%
3277617 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.64 53.0 4.55e-01 95.2% 80.0%
4009799 274.1.1.4 a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSI 0.63 49.0 4.23e-01 87.3% 59.0%
3969990 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.62 55.0 3.72e-01 100.0% 37.1%
4997576 223.1.1.27 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_10 0.62 54.0 4.55e-01 100.0% 80.9%
3990957 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.62 43.0 3.41e-01 100.0% 34.1%
4544637 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.61 53.0 4.72e-01 100.0% 90.3%
5040002 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.61 53.0 4.44e-01 100.0% 77.4%
3881671 719.1.1.2 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF 0.60 47.0 3.92e-01 88.9% 65.0%
5029970 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.60 51.0 4.46e-01 100.0% 75.8%
4928586 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.59 46.0 4.76e-01 100.0% 89.7%
3591435 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.59 47.0 3.66e-01 93.7% 87.7%
3592374 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.59 50.0 3.29e-01 100.0% 40.3%
3588565 6048.1.1.1 a+b two layers › DUF960-like › DUF960-like › DUF960-like › DUF960 0.58 45.0 4.13e-01 88.9% 96.6%
3965259 243.3.1.16 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY_2 0.58 41.0 3.89e-01 74.6% 90.5%
3574976 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.57 39.0 4.14e-01 71.4% 90.9%
3600727 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 49.0 3.13e-01 100.0% 35.6%
3262978 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.55 47.0 3.23e-01 100.0% 77.5%
5071917 2004.1.1.16 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf 0.55 44.0 3.26e-01 100.0% 34.4%
4603150 316.1.1.26 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › SMODS 0.55 41.0 2.94e-01 81.0% 84.7%
4024045 896.1.1.3 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP9-21 0.54 42.0 3.99e-01 98.4% 70.7%
3602537 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.54 43.0 3.22e-01 90.5% 70.6%
3998296 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 46.0 4.13e-01 96.8% 93.3%
3914585 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 46.0 3.86e-01 93.7% 71.4%
3080512 330.2.1.1 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE 0.54 39.0 3.51e-01 81.0% 84.5%
3943423 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.53 42.0 4.29e-01 100.0% 90.0%
3923911 896.1.1.3 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP9-21 0.53 41.0 3.91e-01 98.4% 70.7%
3399510 896.1.1.3 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP9-21 0.53 41.0 3.90e-01 98.4% 70.7%
5699 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.53 44.0 4.29e-01 100.0% 82.9%
3701084 316.1.1.14 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD 0.53 42.0 3.04e-01 88.9% 49.7%
3742859 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.53 42.0 4.33e-01 100.0% 91.7%
4947114 298.1.1.0 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.52 40.0 3.06e-01 88.9% 80.6%
3606814 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.52 41.0 3.89e-01 100.0% 71.8%
5077371 4272.1.1.1 a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.51 43.0 3.27e-01 100.0% 39.3%
3386147 2004.1.1.86 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › FeoB_N 0.51 41.0 2.89e-01 100.0% 27.5%
3907293 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.51 44.0 3.67e-01 93.7% 71.4%
3439448 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 40.0 2.81e-01 90.5% 44.3%
4941364 330.2.1.0 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.51 37.0 3.21e-01 79.4% 75.2%
3740333 7512.1.1.136 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1, Glyco_transf_5 0.50 41.0 2.43e-01 90.5% 37.8%