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MG710528.1__AVD99033.1__X__00008

Bact-Vir

MG710528.1__AVD99033.1__X__00008

Identity

Accession:
MG710528 ↗
Kingdom:
phage

Quality

94.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Oslovirus› Escherichia_phage_GER2

TaxID: 2070178

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-77
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00589.28 best Phage_integrase 28.2 2.20e-06 74.0% 31.4%
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3crmA02 1.10.287.890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 0.66 37.0 3.58e-01 80.5% 50.0%
4m52A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 40.0 2.83e-01 72.7% 22.5%
1ykhA00 6.10.140.200 Special › Helix non-globular › Helix Hairpins › 0.61 39.0 3.66e-01 71.4% 52.6%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.60 41.0 3.98e-01 74.0% 64.7%
3viuA04 3.90.650.10 Alpha Beta › Alpha-Beta Complex › Phosphoribosyl-aminoimidazole Synthetase; Chain A, domain 2 › PurM-like C-terminal domain 0.57 41.0 3.21e-01 76.6% 49.7%
2gtsA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.56 39.0 3.95e-01 75.3% 72.7%
1gaxA05 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.56 37.0 3.85e-01 71.4% 72.6%
5a4uF02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.54 38.0 3.23e-01 71.4% 47.9%
4it4A02 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.54 36.0 3.44e-01 70.1% 58.2%
7nc3F01 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.53 37.0 3.26e-01 71.4% 52.6%
2zxqA06 1.20.1270.70 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle 0.53 35.0 3.72e-01 74.0% 78.8%
4w4kA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.53 37.0 3.69e-01 74.0% 72.0%
3b40A02 1.10.287.650 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › L27 domain 0.52 35.0 3.97e-01 74.0% 91.4%
2lw1A00 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.52 35.0 3.42e-01 70.1% 63.5%
5nl6A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 35.0 3.22e-01 72.7% 50.9%
2kg7B00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.50 36.0 3.33e-01 77.9% 59.8%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3947901 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.97 79.0 8.65e-01 84.4% 100.0%
3941406 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.95 72.0 8.13e-01 77.9% 100.0%
4004727 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.93 69.0 7.76e-01 76.6% 100.0%
3948653 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.93 69.0 7.72e-01 76.6% 100.0%
3965868 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.92 67.0 7.59e-01 75.3% 100.0%
3949335 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.92 66.0 7.41e-01 74.0% 100.0%
3981700 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.90 62.0 7.27e-01 72.7% 100.0%
3946063 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.90 81.0 5.87e-01 97.4% 41.5%
5012890 101.1.8.8 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integr_3 0.82 61.0 6.81e-01 79.2% 100.0%
4007984 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.82 56.0 6.45e-01 71.4% 100.0%
5012504 101.1.8.8 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integr_3 0.77 67.0 5.02e-01 94.8% 43.9%
5053723 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.77 57.0 6.39e-01 79.2% 100.0%
3518263 4207.1.2.1 ↗ alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region › Med7 0.70 35.0 3.03e-01 80.5% 31.7%
3684006 148.1.3.205 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_At3g28540 0.63 33.0 3.29e-01 81.8% 50.0%
3523903 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.58 35.0 3.53e-01 77.9% 58.7%
3655933 604.12.1.2 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 0.57 35.0 3.23e-01 72.7% 45.0%
4007860 601.4.1.81 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › SirB 0.55 44.0 3.82e-01 88.3% 100.0%
3703244 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.54 41.0 3.50e-01 80.5% 76.8%
3279967 106.1.1.6 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › MPAB_Lcp_cat 0.54 46.0 3.15e-01 98.7% 87.1%
5044328 304.109.1.0 ↗ a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e 0.53 44.0 3.17e-01 92.2% 57.8%
3743245 223.2.1.20 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_1 0.52 44.0 3.75e-01 100.0% 63.7%
3245162 604.1.1.127 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › EMC4 0.51 37.0 3.24e-01 77.9% 52.5%
3353560 195.1.1.3 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like › NSUN5_N 0.51 37.0 3.24e-01 79.2% 54.4%