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MG711462.1__AUV56427.1__X__00010

Bact-Vir

MG711462.1__AUV56427.1__X__00010

Identity

Accession:
MG711462 ↗
Kingdom:
phage

Quality

90.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-60
PDB
Domain cluster: representative
CATH (61)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3tj8A02 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.72 60.0 5.60e-01 93.2% 79.7%
1earA02 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.69 57.0 5.49e-01 93.2% 82.6%
1gmuA01 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.68 55.0 5.37e-01 91.5% 83.6%
1eluA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.66 52.0 4.24e-01 88.1% 58.3%
7uvpA02 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.66 51.0 4.95e-01 89.8% 98.6%
3jcmH04 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.65 51.0 4.77e-01 89.8% 90.9%
1zpwX00 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 52.0 4.71e-01 89.8% 79.3%
1kafA00 3.90.1150.20 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription regulator MotA, C-terminal domain 0.65 49.0 4.19e-01 88.1% 54.6%
3bjoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 48.0 4.02e-01 81.4% 46.6%
2iboA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 52.0 4.56e-01 91.5% 84.3%
4b8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 46.0 3.53e-01 78.0% 42.1%
2uvaG09 2.40.128.700 Mainly Beta › Beta Barrel › Lipocalin › 0.63 51.0 4.15e-01 89.8% 89.7%
1s7hA02 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 50.0 4.57e-01 91.5% 90.2%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 46.0 4.03e-01 81.4% 64.5%
1yqhA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 49.0 4.19e-01 89.8% 72.1%
1zarA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 44.0 3.92e-01 76.3% 67.4%
8gccA02 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.62 48.0 4.32e-01 88.1% 86.0%
2dchX02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.61 52.0 4.35e-01 100.0% 67.6%
3ezjA03 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.61 45.0 4.61e-01 81.4% 94.5%
2cw7A02 1.10.10.1010 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Intein homing endonuclease, domain IV 0.61 49.0 3.84e-01 94.9% 83.6%
2d1hB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 41.0 3.57e-01 72.9% 56.1%
3oopA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 43.0 3.34e-01 76.3% 41.8%
5yxkA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 52.0 4.31e-01 100.0% 96.4%
2a5yC03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 51.0 4.26e-01 100.0% 74.8%
4v1al00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.60 45.0 3.61e-01 86.4% 52.6%
1itpA00 3.30.70.80 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 0.60 46.0 4.35e-01 89.8% 87.0%
4mo0A00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.60 49.0 4.61e-01 100.0% 94.9%
4n3pA02 3.65.10.10 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain 0.59 49.0 3.48e-01 100.0% 85.7%
3df8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 41.0 3.48e-01 76.3% 54.1%
2a61B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 42.0 3.26e-01 76.3% 43.1%
2kx2A00 3.30.780.30 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › 0.58 44.0 3.89e-01 86.4% 91.7%
2pffB05 3.30.70.2430 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 43.0 4.34e-01 83.1% 93.4%
2cxiA03 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.58 42.0 4.08e-01 79.7% 91.4%
5kfnA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.58 47.0 3.48e-01 94.9% 88.1%
1lfpA03 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.58 45.0 4.30e-01 89.8% 82.2%
4bpe700 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 48.0 4.13e-01 96.6% 70.3%
4u7mA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 48.0 4.22e-01 100.0% 87.4%
3qphA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 39.0 3.38e-01 72.9% 49.5%
2y3mB01 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.57 41.0 3.88e-01 81.4% 77.9%
1zvpD00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.57 42.0 3.47e-01 88.1% 85.5%
1cvsC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 47.0 4.07e-01 100.0% 82.2%
1f97A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 47.0 4.00e-01 100.0% 84.8%
1nm2A01 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.55 42.0 4.14e-01 89.8% 85.3%
6grsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 47.0 4.08e-01 100.0% 95.8%
4iusA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 41.0 2.75e-01 83.1% 97.7%
2qbyB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 41.0 3.61e-01 83.1% 83.5%
4qmfD02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.54 39.0 3.51e-01 81.4% 73.9%
4lvnP00 3.30.70.2380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 42.0 3.90e-01 91.5% 90.1%
3jamK00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 45.0 3.94e-01 100.0% 77.1%
2avgA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 44.0 3.78e-01 100.0% 85.5%
2e29A01 3.30.70.2280 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 41.0 3.93e-01 91.5% 93.4%
3euhC02 1.10.10.2260 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MukE-like family, C-terminal domain 0.54 39.0 3.39e-01 83.1% 81.5%
3g87A02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.53 41.0 4.05e-01 91.5% 94.0%
5xyiK00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 45.0 3.95e-01 96.6% 77.8%
2b0lC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 45.0 3.93e-01 100.0% 66.0%
4mz0B05 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.53 40.0 3.94e-01 89.8% 91.0%
1ie5A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 43.0 3.71e-01 100.0% 79.4%
7cayA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.53 40.0 3.51e-01 88.1% 87.0%
1k78B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 39.0 3.39e-01 86.4% 53.9%
7snsB01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 41.0 3.16e-01 100.0% 76.5%
3t66A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.50 38.0 2.62e-01 88.1% 33.3%
ECOD (82)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5059723 306.3.1.0 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like 0.80 69.0 6.70e-01 96.6% 95.4%
3409500 3696.1.1.1 a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › HARP 0.80 67.0 6.30e-01 91.5% 90.0%
3998582 3696.1.1.1 a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › HARP 0.79 71.0 6.69e-01 100.0% 95.7%
3533206 3696.1.1.1 a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › HARP 0.78 65.0 6.30e-01 91.5% 90.8%
3620127 3696.1.1.1 a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › HARP 0.78 69.0 6.26e-01 100.0% 85.0%
3470093 3696.1.1.1 a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › HARP 0.77 64.0 6.20e-01 91.5% 92.3%
4966680 3696.1.1.0 a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related 0.76 66.0 6.43e-01 96.6% 92.3%
4526098 3696.1.1.1 a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › HARP 0.76 67.0 6.06e-01 100.0% 82.5%
4457666 304.22.1.1 a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C 0.74 63.0 5.67e-01 93.2% 73.8%
4028694 306.3.1.0 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like 0.74 60.0 5.87e-01 91.5% 93.8%
3936152 3696.1.1.0 a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related 0.74 64.0 5.75e-01 100.0% 82.4%
5081376 3696.1.1.0 a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related 0.73 63.0 6.03e-01 100.0% 97.1%
3229861 3696.1.1.1 a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › HARP 0.73 63.0 6.05e-01 100.0% 95.7%
4983245 242.2.1.2 a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_endo_N 0.70 61.0 5.71e-01 100.0% 84.0%
4997049 3696.1.1.0 a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related 0.70 60.0 5.76e-01 100.0% 85.7%
4968901 304.22.1.0 a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain 0.70 57.0 5.60e-01 91.5% 98.5%
4260605 304.56.1.2 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.66 53.0 4.58e-01 89.8% 69.9%
5031205 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.65 44.0 3.09e-01 71.2% 40.4%
3206671 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.65 55.0 4.39e-01 100.0% 63.1%
5025092 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.65 52.0 4.92e-01 93.2% 84.0%
4356131 304.56.1.2 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.64 51.0 4.60e-01 89.8% 76.5%
3786220 304.11.1.0 a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.64 51.0 4.57e-01 89.8% 74.1%
4217450 304.22.1.1 a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C 0.64 52.0 5.00e-01 94.9% 81.4%
4032728 101.1.9.43 alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF771 0.64 45.0 4.42e-01 76.3% 95.4%
4174817 327.16.1.17 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › PF27474 0.63 45.0 4.73e-01 79.7% 93.9%
4514234 304.56.1.2 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.63 51.0 4.50e-01 91.5% 68.9%
4611550 304.56.1.2 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.63 50.0 4.28e-01 89.8% 65.0%
4426624 304.56.1.2 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.63 51.0 4.56e-01 91.5% 72.9%
4073616 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.62 50.0 4.86e-01 89.8% 95.4%
4586587 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.62 48.0 4.88e-01 89.8% 88.3%
4651803 304.56.1.2 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.62 50.0 4.38e-01 91.5% 66.7%
4170381 304.56.1.2 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.62 50.0 4.34e-01 91.5% 64.9%
3987502 304.25.1.0 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain 0.62 50.0 3.78e-01 100.0% 69.7%
5079048 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.61 46.0 4.58e-01 89.8% 81.7%
5060568 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.61 49.0 4.96e-01 91.5% 100.0%
4651197 304.120.1.5 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › RlmL_1st 0.60 47.0 4.75e-01 89.8% 96.7%
2721400 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 44.0 4.16e-01 79.7% 64.4%
5034107 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 45.0 4.05e-01 83.1% 82.4%
4977215 304.117.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC 0.60 45.0 4.57e-01 88.1% 96.7%
5039780 304.126.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.60 48.0 4.69e-01 91.5% 95.4%
3983963 101.1.9.41 alpha arrays › HTH › HTH › Putative DNA-binding domain › ORF6N 0.60 48.0 4.18e-01 98.3% 93.3%
3624179 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 50.0 4.38e-01 100.0% 92.6%
4025128 304.7.1.24 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › PF30120 0.59 47.0 4.38e-01 93.2% 92.5%
5026454 304.126.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.59 47.0 4.65e-01 93.2% 92.3%
4170754 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.59 46.0 4.62e-01 89.8% 88.3%
4137585 304.56.1.2 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.59 46.0 4.20e-01 89.8% 76.5%
4589701 3016.1.1.10 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › GDC-P 0.59 50.0 4.63e-01 100.0% 91.3%
5000330 101.1.2.109 alpha arrays › HTH › HTH › winged helix domain › Rio2_N 0.59 44.0 4.03e-01 81.4% 76.2%
5068452 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.58 41.0 3.72e-01 78.0% 68.2%
3391282 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.57 50.0 4.30e-01 100.0% 87.4%
4932125 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.57 41.0 3.45e-01 78.0% 52.4%
4940863 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 38.0 3.48e-01 71.2% 62.7%
3863764 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.57 49.0 4.18e-01 100.0% 83.0%
4886247 4143.1.1.10 a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › RlmL_1st 0.56 43.0 4.36e-01 89.8% 96.7%
3590743 304.3.1.14 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › DrrA1-3_C 0.56 44.0 4.34e-01 91.5% 92.3%
4078225 304.120.1.5 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › RlmL_1st 0.56 43.0 4.33e-01 89.8% 96.7%
4002427 327.11.2.13 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PNO1_2nd 0.56 40.0 3.84e-01 81.4% 92.0%
4127927 327.19.1.1 a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain › MutL_C 0.56 41.0 3.99e-01 83.1% 77.1%
3586924 304.128.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB 0.56 44.0 4.09e-01 93.2% 88.7%
5065605 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.55 40.0 3.33e-01 78.0% 52.7%
5040212 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.55 39.0 3.28e-01 78.0% 50.0%
4984016 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.54 39.0 3.69e-01 78.0% 74.7%
2831815 101.1.2.47 alpha arrays › HTH › HTH › winged helix domain › S10_plectin 0.54 46.0 4.23e-01 98.3% 82.7%
3989708 304.4.1.76 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DrrA1-3_C 0.54 41.0 4.13e-01 89.8% 96.7%
3099741 101.1.2.47 alpha arrays › HTH › HTH › winged helix domain › S10_plectin 0.54 45.0 3.89e-01 98.3% 77.8%
3580419 3914.1.1.2 alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › Anoctamin,Anoct_dimer 0.54 41.0 2.31e-01 84.7% 63.6%
3271802 2006.1.1.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NIF 0.54 47.0 3.14e-01 100.0% 72.2%
4862320 101.1.2.47 alpha arrays › HTH › HTH › winged helix domain › S10_plectin 0.54 45.0 3.96e-01 100.0% 81.2%
4065065 304.8.1.24 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF2129 0.54 41.0 3.95e-01 89.8% 84.3%
5028972 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.54 39.0 3.15e-01 79.7% 84.8%
4064296 304.24.1.25 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › DUF2129 0.54 40.0 3.92e-01 89.8% 84.3%
3190289 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.53 38.0 2.64e-01 79.7% 45.4%
2106037 101.1.2.47 alpha arrays › HTH › HTH › winged helix domain › S10_plectin 0.53 45.0 3.95e-01 96.6% 77.8%
4536162 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.53 37.0 3.58e-01 79.7% 81.3%
4975635 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 42.0 3.05e-01 93.2% 83.2%
3928546 101.1.2.47 alpha arrays › HTH › HTH › winged helix domain › S10_plectin 0.52 43.0 3.77e-01 100.0% 75.0%
3974773 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 41.0 3.55e-01 93.2% 83.8%
2152083 101.1.2.47 alpha arrays › HTH › HTH › winged helix domain › S10_plectin 0.52 42.0 3.80e-01 100.0% 79.3%
3922931 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.51 42.0 3.74e-01 100.0% 87.4%
4927248 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 40.0 3.82e-01 100.0% 74.3%
3499056 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 42.0 3.34e-01 100.0% 93.3%
4971049 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.50 41.0 3.77e-01 94.9% 77.5%
D2 high residues 63-108
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1oxjA02 1.25.40.170 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Smaug, PHAT domain 0.69 48.0 3.62e-01 100.0% 31.2%
3if4A02 1.20.5.1210 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Integron cassette protein helical domain 0.67 41.0 4.09e-01 100.0% 59.6%
2rd9B01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.65 52.0 3.65e-01 100.0% 52.6%
1omsA00 3.30.70.1050 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain 0.64 42.0 3.12e-01 95.7% 27.2%
3vvmA02 1.10.1740.110 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.62 51.0 3.98e-01 100.0% 42.2%
1qlbA03 1.20.58.100 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain 0.62 48.0 3.63e-01 100.0% 34.7%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.61 53.0 3.61e-01 100.0% 94.4%
1e91A00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.60 52.0 4.24e-01 100.0% 52.9%
1zw8A01 6.10.140.370 Special › Helix non-globular › Helix Hairpins › 0.60 43.0 4.27e-01 80.4% 100.0%
4ceiA03 6.10.250.2380 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.60 52.0 3.94e-01 100.0% 71.4%
2ggoA02 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.59 49.0 3.31e-01 100.0% 55.0%
8e83B01 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.59 47.0 2.71e-01 89.1% 79.3%
2kseA00 1.20.5.1040 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Sensor protein qsec. 0.58 47.0 3.99e-01 100.0% 54.5%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.58 48.0 4.08e-01 100.0% 55.7%
4n81A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.58 50.0 3.60e-01 100.0% 35.3%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 51.0 3.90e-01 100.0% 67.9%
4am6A03 3.30.420.580 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.57 48.0 3.01e-01 100.0% 19.4%
3b8mC02 1.10.287.210 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.56 44.0 3.37e-01 100.0% 38.5%
6urtA02 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 47.0 3.85e-01 100.0% 79.5%
2f22A00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.54 43.0 3.11e-01 97.8% 29.6%
4nxtA01 1.10.1410.40 Mainly Alpha › Orthogonal Bundle › Poly(a)-polymerase, middle domain › 0.53 45.0 3.25e-01 100.0% 32.4%
6acsA00 3.40.1180.10 Alpha Beta › 3-Layer(aba) Sandwich › Undecaprenyl pyrophosphate synthetase › Decaprenyl diphosphate synthase-like 0.52 46.0 2.87e-01 95.7% 28.4%
6imeA01 3.40.1180.10 Alpha Beta › 3-Layer(aba) Sandwich › Undecaprenyl pyrophosphate synthetase › Decaprenyl diphosphate synthase-like 0.51 43.0 2.69e-01 95.7% 24.1%
4yleA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.50 41.0 2.99e-01 95.7% 58.9%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5082442 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.67 55.0 3.97e-01 100.0% 33.1%
5064040 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.66 56.0 3.63e-01 100.0% 21.5%
3795211 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.66 55.0 3.70e-01 100.0% 24.6%
3943772 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.65 52.0 3.46e-01 100.0% 22.1%
3719527 2486.1.1.11 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › ECH_2 0.65 53.0 3.02e-01 100.0% 55.1%
5081618 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.65 54.0 3.96e-01 100.0% 35.8%
5028061 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.64 53.0 4.26e-01 100.0% 47.8%
5029669 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.63 53.0 3.94e-01 100.0% 36.7%
3173916 102.1.2.1 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.61 55.0 3.37e-01 100.0% 30.0%
5018039 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.59 52.0 3.88e-01 100.0% 60.9%
3199866 601.4.1.0 alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.59 46.0 2.91e-01 100.0% 16.3%
3544243 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.58 47.0 3.61e-01 89.1% 73.3%
5036014 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.58 48.0 3.93e-01 100.0% 53.7%
4031068 150.5.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.57 50.0 4.11e-01 100.0% 80.0%
3873540 633.23.1.34 alpha bundles › Bromodomain-like › Claudin › Claudin › CD20 0.57 50.0 3.39e-01 100.0% 95.3%
4940192 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.57 46.0 3.52e-01 100.0% 37.7%
4018516 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.57 49.0 3.17e-01 100.0% 57.1%
3959227 150.7.1.2 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PE › PE › EspB_PE 0.56 47.0 3.95e-01 100.0% 78.8%
3710231 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.56 43.0 3.21e-01 100.0% 88.4%
4782097 5001.1.1.6 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Bac_rhodopsin 0.55 44.0 4.03e-01 100.0% 66.7%
4018497 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.54 48.0 3.42e-01 100.0% 45.7%
4997212 131.1.1.0 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.54 44.0 3.18e-01 100.0% 93.5%
3911582 633.21.1.23 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CD20 0.54 46.0 3.26e-01 100.0% 42.0%
4958051 7014.1.1.2 alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › TauE 0.53 43.0 2.72e-01 91.3% 86.3%
3563128 386.1.1.244 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2, zf-met 0.53 45.0 3.59e-01 100.0% 59.0%
4585740 101.11.1.0 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.53 44.0 3.61e-01 100.0% 50.0%
4411778 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 45.0 2.77e-01 100.0% 21.4%
3797019 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.52 40.0 2.58e-01 97.8% 34.7%
3262326 3615.1.1.24 alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › CDK5RAP3 0.52 45.0 3.11e-01 100.0% 41.2%
4214015 101.11.1.0 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.51 43.0 3.33e-01 100.0% 40.9%