←Back to structures

MG711462.1__AUV56441.1__X__00024

Bact-Vir

MG711462.1__AUV56441.1__X__00024

Identity

Accession:
MG711462 ↗
Kingdom:
phage

Quality

93.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Eponavirus› Faecalibacterium_phage_FP_Epona

TaxID: 2070182

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 5-39
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7ztbB01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.79 61.0 3.90e-01 100.0% 18.4%
6t0bc01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.69 58.0 4.56e-01 100.0% 51.3%
1ij5A01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 52.0 4.04e-01 88.6% 94.7%
4qpkB02 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.64 46.0 3.21e-01 82.9% 32.1%
1gaxA02 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.62 51.0 3.13e-01 100.0% 15.0%
2r18A02 1.10.8.880 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2 0.58 50.0 4.17e-01 97.1% 59.3%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4015531 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 48.0 2.74e-01 100.0% 13.1%
None — 0.62 53.0 3.32e-01 100.0% 21.1%
None — 0.61 50.0 3.20e-01 100.0% 17.9%
3062176 148.1.1.0 ↗ alpha arrays › Histone-like › Histone-related › Histone 0.60 49.0 3.44e-01 91.4% 36.4%
4116728 2003.1.1.58 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_4 0.57 50.0 2.83e-01 100.0% 21.8%
D2 medium residues 43-82
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3p2aA01 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.78 55.0 5.76e-01 77.5% 91.7%
5y06A01 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.70 59.0 3.69e-01 100.0% 18.3%
2nutB02 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.66 51.0 4.42e-01 85.0% 59.7%
1m2vB03 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.58 50.0 4.40e-01 100.0% 72.6%
3goxA02 3.30.60.130 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.55 42.0 3.84e-01 85.0% 81.5%
2nutA02 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.55 47.0 4.14e-01 100.0% 65.6%
4oj5B01 3.30.2020.50 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.54 36.0 3.06e-01 70.0% 72.0%
1vziA01 2.20.28.100 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › Desulphoferrodoxin, N-terminal domain 0.52 35.0 3.60e-01 80.0% 81.6%
2jrrA01 2.60.260.40 Mainly Beta › Sandwich › HSP40/DNAj peptide-binding domain › q5lls5 like domains 0.52 40.0 3.81e-01 100.0% 81.1%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3907479 376.1.6.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain 0.88 71.0 5.67e-01 87.5% 46.7%
4978303 375.10.1.0 ↗ few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha 0.85 66.0 5.94e-01 85.0% 61.8%
4881936 376.1.4.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR 0.84 69.0 5.60e-01 90.0% 50.0%
3566936 376.1.4.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR_1 0.81 63.0 5.35e-01 85.0% 53.8%
3467249 376.1.4.4 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › PF26200 0.79 60.0 5.10e-01 87.5% 50.8%
3919958 376.1.6.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR_1 0.78 61.0 5.71e-01 87.5% 70.0%
5045429 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.72 61.0 4.60e-01 95.0% 45.3%
5015586 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.69 47.0 4.44e-01 77.5% 58.0%
5018525 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 47.0 4.76e-01 90.0% 75.0%
3485411 375.6.1.0 ↗ few secondary structure elements › Rubredoxin-like › FlhC-like › FlhC-like 0.66 49.0 5.12e-01 82.5% 97.1%
3808136 375.1.1.30 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 0.65 50.0 3.87e-01 85.0% 44.4%
3440046 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 47.0 4.79e-01 80.0% 82.5%
165690 375.1.1.30 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 0.63 47.0 4.34e-01 100.0% 63.5%
3173243 375.1.1.30 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 0.63 51.0 4.02e-01 87.5% 45.0%
3808970 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 46.0 4.40e-01 92.5% 68.0%
3751810 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.62 45.0 3.28e-01 82.5% 44.8%
3594646 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 51.0 3.92e-01 100.0% 55.6%
4227538 375.1.1.60 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PriA_CRR 0.58 44.0 4.10e-01 90.0% 67.3%
4952915 375.2.1.0 ↗ few secondary structure elements › Rubredoxin-like › YfgJ-like › YfgJ-like 0.55 40.0 4.11e-01 82.5% 94.3%