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MG711462.1__AUV56473.1__X__00056
Bact-VirMG711462.1__AUV56473.1__X__00056
Identity
- Accession:
- MG711462 ↗
- Kingdom:
- phage
Quality
58.6
mean pLDDT
Taxonomy
TaxID: 2070182
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-59
Domain cluster:
representative
D2
medium
residues 60-163
Domain cluster:
rep: LSDeep1_scaffold_42_prodigal-single.1__X__X__00117__D105-220
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF09684.16 best | Tail_P2_I | 53.2 | 4.20e-14 | 92.3% | 69.8% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2yx1A02 | 3.30.300.110 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Met-10+ protein-like domains | 0.63 | 39.0 | 4.39e-01 | 72.1% | 83.1% |
| 8gtzA03 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.60 | 47.0 | 3.90e-01 | 82.7% | 69.1% |
| 6rk7B02 | 3.30.300.10 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.59 | 40.0 | 3.77e-01 | 70.2% | 60.9% |
| 3tc1B00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.56 | 48.0 | 3.50e-01 | 95.2% | 99.0% |
| 2b78A02 | 3.30.750.80 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › RNA methyltransferase domain (HRMD) like | 0.56 | 42.0 | 4.31e-01 | 93.3% | 81.4% |
| 3vseB02 | 3.30.750.80 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › RNA methyltransferase domain (HRMD) like | 0.55 | 42.0 | 4.26e-01 | 93.3% | 83.0% |
| 4i9fA03 | 3.30.300.290 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.52 | 31.0 | 3.51e-01 | 87.5% | 79.2% |
| 3adoA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 37.0 | 3.13e-01 | 75.0% | 98.4% |
| 1nyeA00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.51 | 45.0 | 4.07e-01 | 96.2% | 97.2% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3964966 | 102.7.1.1 ↗ | alpha arrays › HhH/H2TH › Baseplate wedge protein gp7 domain IV › Baseplate wedge protein gp7 domain IV › Tail_P2_I | 0.85 | 79.0 | 7.20e-01 | 100.0% | 91.1% |
| 3977563 | 102.7.1.1 ↗ | alpha arrays › HhH/H2TH › Baseplate wedge protein gp7 domain IV › Baseplate wedge protein gp7 domain IV › Tail_P2_I | 0.83 | 77.0 | 7.13e-01 | 100.0% | 80.0% |
| 5003241 | 102.7.1.1 ↗ | alpha arrays › HhH/H2TH › Baseplate wedge protein gp7 domain IV › Baseplate wedge protein gp7 domain IV › Tail_P2_I | 0.82 | 77.0 | 7.41e-01 | 100.0% | 91.3% |
| 3978327 | 102.7.1.1 ↗ | alpha arrays › HhH/H2TH › Baseplate wedge protein gp7 domain IV › Baseplate wedge protein gp7 domain IV › Tail_P2_I | 0.80 | 74.0 | 7.06e-01 | 100.0% | 89.2% |
| 3942252 | 3261.1.1.8 ↗ | a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › DUF2612 | 0.66 | 57.0 | 5.67e-01 | 100.0% | 90.9% |
| 3588358 | 327.10.1.6 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › DNA_pol3_a_NI | 0.66 | 42.0 | 4.61e-01 | 93.3% | 78.8% |
| 3500879 | 327.11.1.9 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › Phage_Wedge1 | 0.65 | 48.0 | 5.23e-01 | 98.1% | 94.1% |
| 4472636 | 327.18.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › 40S ribosomal protein S7-A › 40S ribosomal protein S7-A › DNA_pol3_a_NI | 0.64 | 41.0 | 4.45e-01 | 93.3% | 78.8% |
| 3986979 | 1049.2.1.2 ↗ | alpha duplicates or obligate multimers › Baseplate wedge protein gp7 helical domain-like › Baseplate wedge protein gp6 helical domain › Baseplate wedge protein gp6 helical domain › Phage_Wedge1 | 0.63 | 57.0 | 5.00e-01 | 100.0% | 67.5% |
| 4053087 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.63 | 46.0 | 3.85e-01 | 76.9% | 65.6% |
| 3285932 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.62 | 43.0 | 3.75e-01 | 71.2% | 90.3% |
| 4217072 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.61 | 44.0 | 3.69e-01 | 76.0% | 63.8% |
| 3164121 | 316.1.1.43 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DUF294 | 0.61 | 44.0 | 3.78e-01 | 75.0% | 70.9% |
| 4086723 | 316.1.1.43 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DUF294 | 0.61 | 43.0 | 3.83e-01 | 74.0% | 71.0% |
| 4642603 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.61 | 44.0 | 3.75e-01 | 76.9% | 66.3% |
| 3592491 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.60 | 33.0 | 3.17e-01 | 92.3% | 45.0% |
| 4142691 | 298.4.1.4 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › OSCP | 0.60 | 33.0 | 3.14e-01 | 78.8% | 45.0% |
| 4461227 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.60 | 43.0 | 3.77e-01 | 76.0% | 73.1% |
| 3997033 | 224.1.1.0 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like | 0.59 | 38.0 | 4.13e-01 | 100.0% | 78.8% |
| 5012398 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.59 | 42.0 | 3.86e-01 | 74.0% | 96.3% |
| 5002606 | 327.6.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › FeS_assembly_P | 0.58 | 41.0 | 4.50e-01 | 74.0% | 96.5% |
| 4598542 | 5046.1.1.1 ↗ | extended segments › F-type ATP synthase subunit b › F-type ATP synthase subunit b › F-type ATP synthase subunit b › ATP-synt_B | 0.58 | 35.0 | 2.63e-01 | 82.7% | 25.3% |
| 4339805 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.57 | 43.0 | 3.56e-01 | 81.7% | 62.4% |
| 4433574 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.52 | 46.0 | 3.73e-01 | 100.0% | 63.3% |
| 4384000 | 298.4.1.5 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › ATP-synt_B | 0.52 | 32.0 | 2.64e-01 | 82.7% | 32.0% |
| 4064121 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.52 | 43.0 | 3.69e-01 | 94.2% | 71.7% |
| None | — | 0.52 | 45.0 | 3.74e-01 | 100.0% | 68.2% | |
| 4117811 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.51 | 45.0 | 3.64e-01 | 100.0% | 63.3% |
| 4623683 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.51 | 45.0 | 3.69e-01 | 100.0% | 64.5% |
| 4356384 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.51 | 45.0 | 3.94e-01 | 99.0% | 72.5% |
| 4401784 | 316.1.1.43 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DUF294 | 0.51 | 45.0 | 3.70e-01 | 100.0% | 67.2% |
D3
medium
residues 206-319