Back to structures

MG711463.1__AUV56529.1__X__00036

Bact-Vir

MG711463.1__AUV56529.1__X__00036

Identity

Accession:
MG711463 ↗
Kingdom:
phage

Quality

92.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-80
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2x1cB01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.69 48.0 3.20e-01 72.0% 86.2%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.67 55.0 4.14e-01 89.3% 67.2%
3buxB03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.66 50.0 4.83e-01 81.3% 77.9%
1clwA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.65 42.0 2.54e-01 76.0% 9.2%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.64 52.0 5.17e-01 89.3% 85.0%
5hftD00 3.60.20.40 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Gamma-glutamyltranspeptidase, small (S) subunit 0.64 51.0 4.01e-01 86.7% 95.5%
3cz8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.63 34.0 3.88e-01 80.0% 70.2%
3kl9A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.63 47.0 3.29e-01 81.3% 94.3%
3pcrA01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.63 50.0 4.71e-01 88.0% 86.2%
5gm0A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.63 48.0 3.89e-01 84.0% 64.2%
3f4lA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.61 51.0 3.64e-01 92.0% 75.3%
3zxfA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 47.0 3.92e-01 84.0% 69.6%
6pxcA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.61 49.0 4.40e-01 88.0% 90.4%
2hzmG01 3.30.310.180 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.60 51.0 4.48e-01 94.7% 66.1%
5gm0A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 46.0 3.92e-01 84.0% 70.0%
5nldB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 46.0 3.85e-01 84.0% 67.4%
4nkbA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.60 53.0 4.62e-01 98.7% 86.0%
1i1nA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.59 48.0 3.42e-01 88.0% 84.4%
3dueA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.59 46.0 3.84e-01 82.7% 67.7%
2oq8A00 2.60.40.2930 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 42.0 3.41e-01 76.0% 88.0%
2xzmW01 3.10.290.10 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain 0.58 40.0 3.48e-01 72.0% 72.0%
3w9kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 49.0 4.05e-01 93.3% 81.5%
2wkkA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 45.0 3.60e-01 84.0% 61.3%
2b4wA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 47.0 3.20e-01 90.7% 62.5%
4v1ap00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.58 44.0 4.08e-01 100.0% 64.9%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 40.0 4.14e-01 82.7% 77.5%
3mwxA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.57 43.0 2.84e-01 81.3% 83.5%
1vhoA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.57 50.0 3.55e-01 100.0% 93.8%
2byoA00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.57 41.0 3.07e-01 76.0% 83.1%
2bvbA00 2.60.120.710 Mainly Beta › Sandwich › Jelly Rolls › Toxoplasma gondii micronemal protein 1 TgMIC1 0.57 40.0 3.28e-01 73.3% 69.3%
2uurA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 46.0 3.34e-01 89.3% 38.1%
3nixB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 42.0 2.69e-01 81.3% 57.2%
2pe3D01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.56 50.0 3.49e-01 100.0% 92.4%
1whzA00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.56 44.0 4.53e-01 96.0% 94.2%
2eigA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 43.0 3.02e-01 82.7% 70.9%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.55 45.0 4.37e-01 96.0% 91.0%
3vz9B00 3.30.457.50 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Chromosome segregation protein Spc25 0.55 42.0 3.86e-01 85.3% 76.7%
3pieB05 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 42.0 4.46e-01 94.7% 100.0%
2fvgA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.54 47.0 3.38e-01 100.0% 92.8%
1mpgA01 3.30.310.20 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain 0.53 45.0 4.04e-01 100.0% 92.0%
2jozA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 42.0 3.93e-01 88.0% 99.0%
6cnhA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 37.0 3.64e-01 93.3% 68.8%
5iroD00 2.60.40.3530 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 41.0 3.72e-01 84.0% 66.7%
1e69A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 39.0 2.76e-01 82.7% 41.1%
1v3eA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.52 42.0 2.72e-01 94.7% 87.2%
1z4vA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.52 44.0 2.80e-01 100.0% 89.4%
1gqyB02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.52 39.0 2.78e-01 80.0% 30.9%
4k30A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 41.0 3.41e-01 93.3% 86.3%
2wtzA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.51 38.0 2.72e-01 81.3% 29.1%
5mteA00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.50 38.0 3.11e-01 80.0% 83.9%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3784736 1.1.5.30 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_oxase_2 0.78 54.0 3.74e-01 72.0% 64.1%
3499411 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.71 55.0 3.27e-01 82.7% 27.0%
4030530 77.2.1.1 beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.69 58.0 4.91e-01 90.7% 59.2%
3984944 213.2.1.0 a+b three layers › Nat/Ivy › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme, Ivy 0.67 49.0 4.71e-01 77.3% 80.0%
3591979 77.2.1.1 beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.67 50.0 3.93e-01 78.7% 40.0%
3230371 3180.1.1.0 a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related 0.65 51.0 4.40e-01 81.3% 60.9%
3225336 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.65 55.0 4.36e-01 90.7% 82.8%
3916473 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.64 52.0 4.72e-01 88.0% 82.0%
4026029 77.3.1.3 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN 0.63 44.0 3.60e-01 72.0% 43.1%
4854906 77.2.1.1 beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.63 43.0 4.00e-01 72.0% 56.2%
3980522 298.1.1.8 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C 0.62 50.0 3.51e-01 88.0% 68.6%
3922383 79.1.1.27 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › MORN 0.62 42.0 4.08e-01 70.7% 63.5%
3612462 77.3.1.3 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN 0.62 42.0 3.63e-01 70.7% 48.7%
3917289 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.62 51.0 3.83e-01 89.3% 45.6%
3505545 10.1.1.4 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.61 47.0 3.94e-01 84.0% 68.1%
3595247 77.2.1.0 beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N 0.61 41.0 3.44e-01 70.7% 41.5%
3534125 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.60 50.0 3.51e-01 89.3% 36.4%
4662143 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.60 49.0 3.48e-01 88.0% 34.1%
3599618 77.2.1.1 beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.60 42.0 3.00e-01 73.3% 35.5%
3521864 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.59 48.0 3.42e-01 88.0% 36.8%
5054384 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.59 49.0 5.07e-01 94.7% 98.6%
3491787 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.59 41.0 3.01e-01 73.3% 64.3%
4889700 221.1.2.6 a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4,RS4NT 0.59 41.0 3.53e-01 72.0% 70.9%
3909185 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.59 47.0 3.45e-01 88.0% 38.5%
4002892 109.4.1.2561 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FATC 0.58 45.0 2.65e-01 84.0% 14.1%
3894532 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.58 47.0 3.50e-01 89.3% 40.5%
3769418 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.58 46.0 3.32e-01 88.0% 36.8%
3711638 883.1.1.6 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1_N 0.58 44.0 3.56e-01 82.7% 64.0%
4671179 221.1.2.7 a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › RS4NT 0.57 42.0 3.58e-01 77.3% 72.5%
3430637 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.56 42.0 2.82e-01 80.0% 41.3%
164585 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.56 46.0 3.34e-01 89.3% 38.1%
3208276 883.1.1.6 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1_N 0.55 45.0 3.51e-01 88.0% 63.7%
3240511 4184.1.1.0 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.55 43.0 3.92e-01 86.7% 88.6%
4025728 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.55 44.0 3.87e-01 88.0% 78.3%
4140248 5.1.4.577 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › YqgU 0.55 40.0 2.74e-01 80.0% 27.7%
3311784 77.2.1.1 beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.54 41.0 3.50e-01 81.3% 94.4%
3629117 77.2.1.1 beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.54 40.0 3.29e-01 81.3% 96.7%
3702212 77.2.1.1 beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.53 41.0 3.17e-01 84.0% 47.2%
3710275 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.53 46.0 3.29e-01 98.7% 75.0%
3610137 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 38.0 2.42e-01 78.7% 34.5%
3793430 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.53 44.0 4.17e-01 98.7% 100.0%
2983288 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 46.0 4.37e-01 96.0% 92.1%
4602962 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.52 45.0 3.66e-01 98.7% 86.7%
2641776 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.52 43.0 3.70e-01 94.7% 88.3%
4028623 5.1.3.135 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Kelch_KLHDC2_KLHL20_DRC7, Beta-prop_ATRN-LZTR1 0.52 38.0 2.60e-01 81.3% 39.4%
3820829 5.1.5.66 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_1 0.51 42.0 2.92e-01 97.3% 91.5%
3538411 213.1.1.11 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › NAT 0.50 40.0 3.33e-01 93.3% 85.2%
5073657 206.1.3.3 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › PPDK_N 0.50 38.0 2.59e-01 85.3% 40.3%