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MG711465.1__AUV56625.1__X__00006

Bact-Vir

MG711465.1__AUV56625.1__X__00006

Identity

Accession:
MG711465 ↗
Kingdom:
phage

Quality

88.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 45-66_85-165
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6rygA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.61 55.0 5.33e-01 100.0% 86.2%
3bdwA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.61 53.0 5.01e-01 100.0% 78.9%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 32.0 3.87e-01 86.4% 82.4%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 31.0 3.72e-01 91.3% 84.8%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.55 27.0 3.63e-01 79.6% 97.9%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.53 35.0 3.98e-01 93.2% 92.2%
3j7yD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 34.0 3.82e-01 100.0% 84.0%
7razA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 31.0 3.36e-01 94.2% 69.4%
1vwxA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 35.0 3.91e-01 99.0% 87.5%
4q66D01 6.20.120.50 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 25.0 2.88e-01 100.0% 60.3%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 29.0 3.63e-01 76.7% 93.5%
1q5qA00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.51 44.0 3.52e-01 98.1% 59.8%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4015023 209.1.1.0 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like 0.68 53.0 5.06e-01 100.0% 70.8%
4872550 209.1.1.1 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.64 53.0 5.14e-01 100.0% 79.1%
3226269 209.1.1.1 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.62 58.0 5.23e-01 100.0% 77.8%
4054563 209.1.1.1 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.62 54.0 4.58e-01 100.0% 59.1%
3245906 209.1.1.1 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.61 57.0 5.01e-01 100.0% 78.6%
3931907 209.1.1.1 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.60 55.0 4.97e-01 100.0% 76.4%
4321173 4.1.1.98 beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.57 31.0 3.93e-01 96.1% 93.1%
3451280 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 32.0 2.80e-01 96.1% 37.4%
4191690 4.1.1.98 beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.56 31.0 3.89e-01 97.1% 94.8%
4084190 4.1.1.98 beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.55 31.0 3.92e-01 97.1% 96.6%
4275696 4.1.1.38 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.55 36.0 3.37e-01 99.0% 53.8%
4634428 4.1.1.38 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.54 35.0 3.08e-01 100.0% 44.5%
3649741 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.54 30.0 3.42e-01 95.1% 73.3%
3855974 4.1.1.253 beta barrels › SH3 › SH3 › SH3 › DUF4537 0.54 34.0 3.89e-01 98.1% 88.0%
4116921 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.54 29.0 3.59e-01 97.1% 88.3%
4023922 4.1.1.38 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.54 35.0 3.14e-01 100.0% 48.6%
2664854 4.1.1.38 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.53 35.0 3.56e-01 99.0% 67.6%
3278801 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.53 29.0 3.57e-01 98.1% 84.6%
4347999 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.53 29.0 3.56e-01 97.1% 84.6%
4213135 4.1.1.38 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.53 35.0 3.34e-01 100.0% 56.5%
4142364 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.53 31.0 3.66e-01 95.1% 89.2%
3559960 2006.1.6.66 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF4537 0.53 34.0 3.96e-01 98.1% 94.3%
5036616 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.53 32.0 3.74e-01 95.1% 88.6%
5081654 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.52 25.0 3.23e-01 81.6% 78.3%
3622389 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 29.0 3.54e-01 95.1% 86.2%
3595917 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 34.0 2.99e-01 100.0% 44.5%
3503388 4.1.1.38 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.52 34.0 3.40e-01 99.0% 63.6%
3563220 4.1.1.220 beta barrels › SH3 › SH3 › SH3 › BAHCC1-like_Tudor 0.52 34.0 3.75e-01 99.0% 86.3%
3510676 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 30.0 3.19e-01 95.1% 63.2%
2641775 4.1.1.38 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.52 34.0 3.16e-01 100.0% 52.2%
3608770 4.1.1.38 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.52 34.0 2.97e-01 100.0% 44.5%
4662947 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.52 29.0 3.54e-01 98.1% 87.7%
4026678 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.52 31.0 3.63e-01 95.1% 88.6%
3917372 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.52 30.0 3.47e-01 93.2% 80.0%
4327595 4.1.1.402 beta barrels › SH3 › SH3 › SH3 › DUF2761 0.51 35.0 3.69e-01 100.0% 76.8%
3511278 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 33.0 3.83e-01 100.0% 97.1%
4142639 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.51 44.0 3.36e-01 98.1% 50.8%
3481770 4.1.1.220 beta barrels › SH3 › SH3 › SH3 › BAHCC1-like_Tudor 0.51 33.0 3.69e-01 95.1% 85.0%
3025579 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.51 29.0 3.65e-01 98.1% 96.7%
5066141 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.50 30.0 3.51e-01 93.2% 90.8%
3616769 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.50 31.0 3.26e-01 97.1% 67.4%
3222210 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.50 33.0 3.93e-01 99.0% 100.0%
D2 medium residues 1-44_67-84_166-203
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.76 42.0 4.76e-01 70.0% 71.4%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.74 41.0 5.08e-01 71.0% 86.2%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 43.0 5.40e-01 72.0% 95.2%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 42.0 5.33e-01 71.0% 93.7%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 42.0 5.01e-01 71.0% 87.0%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.68 38.0 4.95e-01 70.0% 96.6%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 39.0 4.92e-01 72.0% 93.5%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 39.0 4.50e-01 89.0% 77.3%
4bb7B00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.60 40.0 3.01e-01 70.0% 35.9%
2jiiA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 43.0 4.20e-01 76.0% 90.0%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.57 39.0 3.41e-01 71.0% 57.0%
2w1zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 41.0 3.64e-01 76.0% 80.9%
2z84A00 3.90.70.130 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.55 39.0 3.01e-01 73.0% 40.0%
2rsvA00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.54 41.0 2.70e-01 80.0% 86.8%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.54 39.0 3.73e-01 77.0% 78.7%
3lltA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 39.0 4.08e-01 76.0% 92.5%
3v9fA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 34.0 2.41e-01 72.0% 21.7%
5m07A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 36.0 3.83e-01 72.0% 92.3%
4g1vA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 37.0 3.48e-01 73.0% 72.9%
6ei1A01 3.90.70.130 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.52 36.0 2.73e-01 73.0% 34.9%
3luuA00 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.52 37.0 3.97e-01 76.0% 100.0%
4crsA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 36.0 3.22e-01 72.0% 91.8%
2i1yA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.50 43.0 3.18e-01 98.0% 56.8%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4931822 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 41.0 5.09e-01 71.0% 80.0%
4863266 4.1.1.139 beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.72 40.0 4.90e-01 71.0% 84.6%
3315471 4.8.1.10 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.71 43.0 4.67e-01 73.0% 71.8%
3798312 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.68 42.0 5.01e-01 72.0% 90.0%
3585538 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.67 44.0 4.46e-01 75.0% 67.0%
3793962 4.8.1.10 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.67 41.0 4.30e-01 70.0% 67.8%
3954938 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 40.0 4.83e-01 72.0% 92.3%
3238955 4.1.1.377 beta barrels › SH3 › SH3 › SH3 › MSL3_chromo-like 0.64 41.0 4.50e-01 74.0% 80.0%
4269820 3820.1.1.1 a+b complex topology › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain › Cas9_PI 0.58 40.0 3.34e-01 71.0% 100.0%
3710027 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.57 40.0 3.72e-01 72.0% 69.4%
2582102 3338.2.1.2 a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB › BamI_lipocalin 0.57 39.0 3.54e-01 70.0% 72.9%
3599235 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.54 44.0 3.17e-01 92.0% 93.5%
3873066 206.1.1.71 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kdo 0.54 43.0 2.96e-01 92.0% 85.3%
3213571 206.1.1.70 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 0.53 42.0 2.97e-01 88.0% 85.8%
3360714 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.53 44.0 3.10e-01 93.0% 73.1%
3602267 881.3.1.0 a+b three layers › Mog1p/PsbP-like › Outer membrane-associated lipoprotein TP0453 › Outer membrane-associated lipoprotein TP0453 0.53 38.0 2.97e-01 76.0% 92.9%
3174446 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 48.0 3.24e-01 100.0% 90.0%
3403321 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 41.0 2.84e-01 85.0% 75.1%
3931577 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 39.0 2.90e-01 81.0% 84.6%
3917309 206.1.1.72 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Pkinase_fungal 0.52 41.0 2.97e-01 89.0% 90.9%
3895174 206.1.1.76 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1, Pkinase_fungal 0.51 41.0 2.93e-01 89.0% 88.4%
461497 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 40.0 3.53e-01 87.0% 62.7%
3680912 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 41.0 2.92e-01 91.0% 89.0%
3626637 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.51 44.0 3.13e-01 97.0% 55.1%
3901366 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 40.0 2.91e-01 90.0% 84.1%
3931872 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 45.0 3.13e-01 98.0% 68.3%
3935325 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 40.0 2.87e-01 87.0% 90.5%
3327111 206.1.1.72 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Pkinase_fungal 0.50 40.0 2.89e-01 91.0% 87.7%
3789126 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.50 45.0 2.97e-01 97.0% 52.2%
3923792 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.50 40.0 2.95e-01 88.0% 90.3%
3617845 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.50 42.0 3.20e-01 99.0% 90.2%