Back to structures

MG711465.1__AUV56646.1__X__00027

Bact-Vir

MG711465.1__AUV56646.1__X__00027

Identity

Accession:
MG711465 ↗
Kingdom:
phage

Quality

90.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 32-80
PDB
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qyaB01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.72 63.0 4.53e-01 100.0% 45.1%
4bdxA00 2.10.25.10 Mainly Beta › Ribbon › Laminin › Laminin 0.71 51.0 4.23e-01 89.8% 44.6%
2oq1A03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.69 57.0 4.72e-01 100.0% 60.0%
2cg7A01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.69 51.0 5.26e-01 91.8% 87.0%
1v6zA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.67 57.0 5.26e-01 100.0% 89.2%
1v5vA01 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.66 51.0 3.60e-01 93.9% 26.2%
2azpA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.65 53.0 3.85e-01 98.0% 37.3%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 47.0 4.37e-01 81.6% 60.3%
1tpmA00 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.65 46.0 4.66e-01 91.8% 76.0%
2de6A02 2.20.25.680 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.65 46.0 4.46e-01 91.8% 65.5%
5i7pA02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.64 49.0 5.02e-01 83.7% 89.6%
5dynA01 3.40.50.11970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.64 52.0 4.25e-01 100.0% 59.4%
3nrlA00 2.40.10.390 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.64 54.0 4.88e-01 95.9% 83.8%
3md7A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.64 52.0 3.32e-01 95.9% 71.5%
2otnB01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.63 53.0 3.92e-01 100.0% 45.2%
1o9aA01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.62 43.0 4.42e-01 83.7% 81.8%
1dm9A00 3.10.290.10 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain 0.62 54.0 4.23e-01 98.0% 75.0%
5llwA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.62 45.0 3.88e-01 93.9% 45.7%
1v58A01 3.10.450.70 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Disulphide bond isomerase, DsbC/G, N-terminal 0.62 46.0 4.09e-01 81.6% 76.1%
1wquA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.62 51.0 4.03e-01 100.0% 49.1%
4perB00 3.10.130.10 Alpha Beta › Roll › P-30 Protein › Ribonuclease A-like domain 0.61 50.0 3.93e-01 93.9% 56.9%
1e88A03 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.60 44.0 4.63e-01 87.8% 92.9%
2xrcC04 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 49.0 3.40e-01 91.8% 75.8%
4ftxB01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.60 47.0 3.61e-01 91.8% 55.5%
2kc8A00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.60 50.0 4.08e-01 95.9% 53.7%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.59 49.0 3.61e-01 95.9% 46.4%
3ilvA01 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.59 48.0 3.19e-01 100.0% 39.9%
4a0tA03 2.60.320.30 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › 0.58 45.0 3.82e-01 89.8% 76.7%
2nbmA00 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.57 44.0 3.60e-01 93.9% 49.5%
2q07A03 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.57 48.0 4.44e-01 100.0% 95.5%
4paaA03 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.57 44.0 3.10e-01 91.8% 25.9%
5c2vB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 46.0 2.83e-01 100.0% 34.4%
3nhqA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 45.0 3.54e-01 95.9% 39.5%
1pj5A03 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.55 43.0 2.97e-01 91.8% 24.2%
1fo0B00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 41.0 3.27e-01 85.7% 40.2%
6wy9B02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.55 46.0 3.84e-01 100.0% 84.2%
4z48A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.55 47.0 3.04e-01 100.0% 76.7%
3tdgA01 3.10.450.520 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 48.0 4.32e-01 98.0% 90.9%
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.54 45.0 2.83e-01 100.0% 89.1%
4ok4A02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.54 43.0 2.60e-01 91.8% 13.9%
7erlA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 46.0 3.20e-01 100.0% 55.3%
1ri6A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 43.0 2.74e-01 100.0% 27.0%
1f2uB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 44.0 3.14e-01 98.0% 31.0%
3kyeA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.53 41.0 3.28e-01 93.9% 51.3%
3u1wA02 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 41.0 3.76e-01 85.7% 65.2%
1ln1A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 41.0 2.80e-01 89.8% 79.8%
3wirA03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.53 43.0 4.00e-01 100.0% 75.4%
6ziwI01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 42.0 3.70e-01 91.8% 97.4%
1mdcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 39.0 3.13e-01 93.9% 48.9%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 41.0 3.69e-01 87.8% 76.1%
4g41A00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.52 41.0 2.77e-01 98.0% 61.4%
2ra6C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 40.0 2.94e-01 89.8% 44.8%
3r4rA02 2.60.40.2590 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 44.0 3.34e-01 100.0% 93.6%
1sjiA03 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.50 40.0 3.20e-01 100.0% 78.2%
1vw3B01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 43.0 3.54e-01 100.0% 87.1%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4030628 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.80 62.0 3.49e-01 100.0% 8.0%
3992660 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.78 67.0 5.23e-01 100.0% 62.7%
3713993 884.1.1.1 a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C 0.77 67.0 5.24e-01 100.0% 57.1%
3703499 884.1.1.1 a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C 0.77 67.0 5.23e-01 100.0% 57.1%
None 0.76 59.0 3.53e-01 100.0% 11.8%
3834352 3075.1.1.0 a+b two layers › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA 0.75 59.0 3.44e-01 100.0% 9.7%
3266790 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.75 60.0 3.50e-01 100.0% 10.4%
3890372 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.73 61.0 4.85e-01 100.0% 56.4%
3233501 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.73 61.0 4.76e-01 100.0% 54.8%
3227340 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.71 60.0 4.34e-01 100.0% 42.0%
3597513 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 51.0 4.98e-01 79.6% 72.7%
4868829 290.1.1.1 beta barrels › Sortase › Sortase › Sortase › Sortase 0.70 60.0 4.42e-01 95.9% 100.0%
3932894 2492.1.1.36 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › ODR4-like 0.69 57.0 4.16e-01 98.0% 42.7%
4962860 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.69 57.0 4.26e-01 91.8% 72.5%
1014 66.1.1.2 beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske_2 0.68 49.0 5.00e-01 91.8% 86.7%
3984429 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 53.0 4.69e-01 85.7% 80.0%
176 1.1.9.20 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.67 57.0 5.31e-01 100.0% 92.1%
5078127 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.67 55.0 4.60e-01 91.8% 98.8%
3243571 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.67 55.0 3.82e-01 100.0% 34.2%
4938033 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.67 55.0 4.32e-01 95.9% 88.1%
3550232 389.1.1.1 few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF 0.65 46.0 3.89e-01 89.8% 43.5%
4235146 129.1.1.2 alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 3HCDH 0.65 46.0 3.32e-01 75.5% 29.7%
4152365 391.1.1.1 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › fn1 0.65 46.0 4.79e-01 89.8% 82.2%
4032585 884.1.1.1 a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C 0.65 52.0 4.58e-01 100.0% 60.0%
3929256 295.1.1.3 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.64 53.0 3.89e-01 95.9% 42.9%
3623941 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.63 48.0 5.00e-01 85.7% 91.1%
4972053 7575.1.1.0 a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like 0.63 53.0 3.17e-01 100.0% 16.8%
3964304 884.1.1.1 a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C 0.63 51.0 4.40e-01 100.0% 61.4%
5038043 129.1.1.2 alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 3HCDH 0.63 42.0 3.00e-01 71.4% 28.1%
3513418 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.61 48.0 4.98e-01 85.7% 95.6%
4266767 1.1.9.20 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.61 49.0 4.52e-01 100.0% 90.0%
5058487 884.1.1.1 a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C 0.60 49.0 4.25e-01 100.0% 58.8%
3462961 5.1.4.122 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF295 0.60 51.0 3.25e-01 98.0% 33.7%
4644945 246.1.1.0 a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase 0.60 49.0 3.27e-01 100.0% 41.5%
4946882 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 50.0 4.87e-01 93.9% 92.7%
3683776 219.1.1.16 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48 0.59 49.0 3.08e-01 100.0% 25.4%
3969498 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 46.0 2.97e-01 95.9% 31.2%
3649824 5.1.3.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.58 45.0 2.79e-01 89.8% 20.6%
4063281 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.58 40.0 3.57e-01 75.5% 80.0%
3791839 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.57 47.0 4.12e-01 100.0% 67.5%
3276150 2.1.1.52 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Stn1 0.57 45.0 3.40e-01 100.0% 72.0%
3656396 219.1.1.16 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48 0.57 45.0 3.20e-01 91.8% 32.1%
5008603 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.56 45.0 3.06e-01 89.8% 33.2%
3650304 66.1.1.0 beta sandwiches › ISP domain › ISP domain › ISP domain 0.56 43.0 4.15e-01 91.8% 71.7%
4949002 2003.1.5.64 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_9 0.55 45.0 2.86e-01 91.8% 34.3%
3595243 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 46.0 2.88e-01 100.0% 37.8%
3574976 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.55 43.0 4.26e-01 100.0% 94.5%
3708710 5.1.4.169 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.55 43.0 2.43e-01 100.0% 15.2%
3245433 207.1.1.52 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.54 44.0 2.68e-01 89.8% 29.5%
4946325 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 41.0 3.44e-01 93.9% 59.0%
3232107 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.54 43.0 2.78e-01 91.8% 24.6%
3243132 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.53 43.0 2.90e-01 100.0% 29.8%
3708068 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 43.0 2.81e-01 98.0% 51.0%
5014688 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.52 44.0 4.31e-01 98.0% 90.9%
1170462 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.52 41.0 3.87e-01 87.8% 88.5%
4033432 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.52 38.0 3.63e-01 81.6% 85.0%
3964101 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.52 43.0 4.06e-01 93.9% 86.7%
4243492 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.51 40.0 3.81e-01 85.7% 86.7%
3645253 5.1.3.65 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.51 41.0 2.65e-01 100.0% 43.8%
3271259 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.51 40.0 3.34e-01 100.0% 49.4%
3184613 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.51 36.0 2.65e-01 79.6% 81.1%