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MG711466.1__AUV56772.1__X__00059

Bact-Vir

MG711466.1__AUV56772.1__X__00059

Identity

Accession:
MG711466 ↗
Kingdom:
phage

Quality

71.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-48
PDB
Domain cluster: representative
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lsmA00 3.40.5.70 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › DNA packaging chaperone protein FI, C-terminal beta-strand domain 0.78 70.0 6.39e-01 100.0% 80.3%
2e9xB01 3.40.5.50 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.74 65.0 5.78e-01 100.0% 69.7%
3anwA02 3.40.5.50 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.74 66.0 6.14e-01 100.0% 81.0%
2hjqA01 3.40.5.20 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › YqbF domain 0.73 57.0 5.82e-01 100.0% 91.3%
5of3A00 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.72 61.0 3.63e-01 100.0% 13.8%
2e9xD02 3.40.5.60 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.70 59.0 5.55e-01 100.0% 86.7%
5h5oA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.67 59.0 4.33e-01 100.0% 44.0%
6xmpA01 2.70.150.10 Mainly Beta › Distorted Sandwich › Calcium-transporting ATPase, cytoplasmic transduction domain A › Calcium-transporting ATPase, cytoplasmic transduction domain A 0.66 57.0 4.13e-01 100.0% 59.4%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 53.0 4.87e-01 100.0% 88.2%
2byvE03 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.64 57.0 3.80e-01 100.0% 30.7%
2oyzA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.64 57.0 4.52e-01 100.0% 52.1%
5j3uA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 56.0 4.10e-01 100.0% 46.0%
2b8mA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 56.0 4.25e-01 100.0% 45.9%
2atfA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 56.0 3.70e-01 100.0% 33.9%
4fsdA02 3.40.5.100 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.63 53.0 4.44e-01 100.0% 55.8%
3hqxA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 55.0 4.24e-01 100.0% 46.7%
3es4A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 54.0 4.09e-01 100.0% 41.4%
2opkB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 53.0 4.30e-01 100.0% 55.3%
7zvmA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 52.0 4.13e-01 100.0% 68.6%
1vj2A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 54.0 4.06e-01 100.0% 43.0%
1qwrA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 51.0 4.19e-01 100.0% 51.7%
6m9sD01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 52.0 4.06e-01 100.0% 48.5%
1dv2A02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.59 41.0 2.59e-01 76.6% 36.0%
7rh9A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 50.0 3.52e-01 100.0% 39.1%
3bb6C00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 49.0 3.78e-01 100.0% 50.0%
2o1qA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 50.0 3.66e-01 100.0% 39.4%
2q1zB02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 48.0 3.87e-01 100.0% 48.4%
1jb0D00 3.30.1470.10 Alpha Beta › 2-Layer Sandwich › Photosystem 1 Reaction Centre Subunit Ii; Chain: D; › Photosystem I PsaD, reaction center subunit II 0.56 46.0 3.45e-01 100.0% 40.6%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 48.0 4.44e-01 100.0% 93.4%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 48.0 4.42e-01 100.0% 88.9%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 35.0 2.86e-01 78.7% 81.5%
1jvaB02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.50 38.0 3.02e-01 87.2% 40.9%
ECOD (85)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5010674 4076.3.1.11 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › PF25865 0.90 71.0 6.74e-01 100.0% 72.7%
4982789 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.86 75.0 6.64e-01 100.0% 69.2%
3601134 4076.1.1.0 a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like 0.83 64.0 5.55e-01 100.0% 55.7%
4994655 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.80 73.0 7.19e-01 100.0% 94.0%
4981952 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.80 69.0 6.82e-01 100.0% 88.0%
3296816 4076.3.1.6 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › GINS_N 0.80 71.0 6.52e-01 100.0% 76.7%
5000438 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.80 68.0 5.89e-01 100.0% 62.9%
4927873 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.79 68.0 6.20e-01 100.0% 73.3%
4935547 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.79 70.0 6.85e-01 100.0% 92.0%
5069341 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.78 69.0 6.76e-01 100.0% 92.0%
5015232 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.78 67.0 6.39e-01 100.0% 81.8%
4133267 4076.3.1.3 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › SLD5_C 0.78 70.0 6.62e-01 100.0% 87.3%
4358525 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.78 68.0 6.68e-01 100.0% 88.0%
4933005 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.78 70.0 6.40e-01 100.0% 76.7%
5036241 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.78 69.0 6.16e-01 100.0% 70.8%
4025911 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.78 70.0 6.44e-01 100.0% 81.7%
4932084 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.78 70.0 6.83e-01 100.0% 92.0%
5042275 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.78 70.0 6.63e-01 100.0% 85.5%
4991671 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.78 71.0 6.97e-01 100.0% 96.0%
4566383 4076.3.1.8 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › PSF2_N 0.77 68.0 6.07e-01 100.0% 70.8%
4951589 4076.3.1.5 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C 0.77 68.0 6.70e-01 100.0% 92.0%
4978275 4076.3.1.5 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C 0.77 70.0 6.67e-01 100.0% 85.5%
4956746 4076.3.1.5 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C 0.77 70.0 6.87e-01 100.0% 94.0%
4973337 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.77 68.0 6.42e-01 100.0% 83.6%
4993373 4076.3.1.5 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C 0.77 69.0 6.27e-01 97.9% 76.7%
4946969 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.77 69.0 6.82e-01 100.0% 94.0%
5019734 4076.3.1.5 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C 0.77 67.0 6.63e-01 100.0% 92.0%
4941835 4076.3.1.5 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C 0.76 69.0 6.32e-01 100.0% 78.3%
5024995 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.76 66.0 6.32e-01 100.0% 84.9%
4932593 4076.3.1.5 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C 0.76 68.0 6.69e-01 100.0% 94.0%
5066664 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.76 63.0 6.45e-01 97.9% 95.6%
4939413 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.76 68.0 6.68e-01 100.0% 98.0%
4021638 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.76 67.0 5.96e-01 100.0% 70.8%
5044171 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.76 68.0 5.85e-01 100.0% 65.7%
5026920 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.76 69.0 6.33e-01 100.0% 78.3%
4144346 4076.3.1.6 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › GINS_N 0.75 68.0 6.06e-01 100.0% 72.3%
3716713 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.75 67.0 6.55e-01 100.0% 92.0%
5028408 4076.3.1.5 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C 0.75 69.0 6.75e-01 100.0% 94.0%
4967982 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.75 63.0 6.54e-01 97.9% 97.7%
5035786 4076.3.1.5 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C 0.75 67.0 6.61e-01 100.0% 94.0%
5045837 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.75 66.0 6.07e-01 100.0% 76.7%
5011186 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.75 64.0 5.88e-01 100.0% 75.0%
3600426 4076.3.1.3 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › SLD5_C 0.75 64.0 6.16e-01 100.0% 89.1%
4944185 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.74 66.0 5.82e-01 100.0% 69.2%
5055750 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.74 67.0 6.62e-01 100.0% 92.0%
4956745 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.74 67.0 6.56e-01 100.0% 92.0%
5031576 4076.3.1.8 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › PSF2_N 0.74 65.0 6.19e-01 97.9% 81.8%
3929096 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.74 64.0 6.29e-01 100.0% 92.0%
5069643 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.74 66.0 6.31e-01 100.0% 86.8%
5072099 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.74 67.0 6.09e-01 100.0% 76.7%
5044096 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.74 64.0 6.32e-01 97.9% 90.0%
4304365 4076.3.1.8 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › PSF2_N 0.73 64.0 5.58e-01 100.0% 65.7%
3742088 4076.3.1.3 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › SLD5_C 0.73 62.0 6.04e-01 100.0% 87.0%
4230268 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.73 63.0 6.50e-01 97.9% 97.8%
1346119 4076.4.1.1 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain › PriS_C 0.73 63.0 6.11e-01 100.0% 86.3%
5009 4076.3.1.2 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › YqbF 0.73 57.0 5.71e-01 100.0% 85.7%
5010676 4076.4.1.1 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain › PriS_C 0.73 62.0 6.14e-01 100.0% 88.0%
4081421 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.73 65.0 6.37e-01 100.0% 92.0%
3785217 4076.3.1.3 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › SLD5_C 0.72 61.0 5.85e-01 100.0% 89.1%
4932061 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.72 62.0 6.33e-01 100.0% 97.8%
4025149 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.72 62.0 5.80e-01 100.0% 90.0%
4641420 4076.4.1.1 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain › PriS_C 0.72 61.0 4.90e-01 100.0% 48.9%
3060783 4076.3.1.8 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › PSF2_N 0.72 64.0 5.86e-01 100.0% 75.8%
1890284 4076.3.1.5 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C 0.72 63.0 5.90e-01 100.0% 81.0%
3929869 4076.3.1.8 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › PSF2_N 0.72 62.0 5.94e-01 100.0% 83.6%
3818732 4076.3.1.9 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › PSF1_C 0.72 62.0 5.90e-01 100.0% 83.6%
5037502 4076.3.1.5 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C 0.71 64.0 6.09e-01 100.0% 87.0%
4983060 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.71 60.0 5.01e-01 100.0% 55.0%
5036149 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.71 60.0 6.15e-01 100.0% 97.8%
5012 4076.3.1.3 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › SLD5_C 0.70 59.0 5.61e-01 100.0% 89.7%
3314523 4076.3.1.3 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › SLD5_C 0.70 58.0 5.59e-01 100.0% 94.5%
5000883 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.70 59.0 5.89e-01 100.0% 96.0%
4269273 4076.4.1.1 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain › PriS_C 0.69 59.0 6.01e-01 97.9% 97.8%
4993371 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.69 59.0 5.84e-01 100.0% 88.0%
4536596 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.69 59.0 5.90e-01 100.0% 91.7%
None 0.67 59.0 4.31e-01 100.0% 43.0%
4988095 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.67 58.0 5.74e-01 100.0% 94.0%
3966668 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.64 57.0 4.53e-01 100.0% 52.7%
4129656 10.12.1.35 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Ppnp 0.64 57.0 4.51e-01 100.0% 52.7%
135454 10.12.1.35 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Ppnp 0.63 55.0 4.24e-01 100.0% 46.7%
314893 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.62 53.0 4.09e-01 100.0% 46.8%
3215294 10.12.1.97 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › CNBH_CNNM2_C 0.60 53.0 3.64e-01 100.0% 41.8%
3651516 10.12.1.5 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PMI_typeI_C 0.59 51.0 4.01e-01 100.0% 51.0%
4284515 10.12.1.5 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PMI_typeI_C 0.58 49.0 3.90e-01 100.0% 51.0%
3469970 3785.1.1.0 a+b three layers › Suppressor of Fused, C-terminal domain › Suppressor of Fused, C-terminal domain › Suppressor of Fused, C-terminal domain 0.50 39.0 2.74e-01 83.0% 96.6%