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MG711467.1__AUV56803.1__X__00001

Bact-Vir

MG711467.1__AUV56803.1__X__00001

Identity

Accession:
MG711467 ↗
Kingdom:
phage

Quality

74.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-116
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00239.27 best Resolvase 84.2 1.30e-23 99.1% 69.2%
CATH (85)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bvpB00 3.40.50.1390 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Resolvase, N-terminal catalytic domain 0.93 87.0 7.98e-01 100.0% 78.5%
3lhkA01 3.40.50.1390 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Resolvase, N-terminal catalytic domain 0.89 79.0 8.14e-01 99.0% 98.0%
3guvA00 3.40.50.1390 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Resolvase, N-terminal catalytic domain 0.87 83.0 7.24e-01 100.0% 73.2%
6dgbA01 3.40.50.1390 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Resolvase, N-terminal catalytic domain 0.87 74.0 7.83e-01 97.1% 100.0%
2r0qC01 3.40.50.1390 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Resolvase, N-terminal catalytic domain 0.85 69.0 6.22e-01 100.0% 64.5%
4bqqA01 3.40.50.1390 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Resolvase, N-terminal catalytic domain 0.82 78.0 6.95e-01 100.0% 78.6%
2mhcA00 3.40.50.1390 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Resolvase, N-terminal catalytic domain 0.82 76.0 7.24e-01 100.0% 90.8%
3g13B00 3.40.50.1390 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Resolvase, N-terminal catalytic domain 0.76 70.0 6.37e-01 100.0% 78.3%
8a57D01 3.40.50.11060 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › GTPase HflX, N-terminal domain 0.74 64.0 6.53e-01 100.0% 97.1%
1u04A03 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.70 65.0 5.37e-01 100.0% 66.9%
1ga6A00 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.67 61.0 4.17e-01 100.0% 71.0%
3s6gY01 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.66 60.0 4.47e-01 100.0% 88.9%
1ofuX00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.65 49.0 4.77e-01 99.0% 71.2%
3u6uC00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.65 59.0 4.39e-01 100.0% 98.9%
2fp3A01 3.40.50.1460 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.65 58.0 4.56e-01 100.0% 78.0%
4rxtA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.65 58.0 5.10e-01 100.0% 73.4%
4xfkA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.64 58.0 4.61e-01 100.0% 56.7%
4u63A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.64 57.0 4.84e-01 99.0% 70.7%
3we7A00 3.40.50.10320 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LmbE-like 0.64 57.0 4.26e-01 100.0% 82.4%
3sipC00 3.40.50.1460 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.63 56.0 4.98e-01 99.0% 77.0%
5bmoC00 3.40.50.10320 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LmbE-like 0.63 57.0 4.37e-01 100.0% 93.8%
3tb6B02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.63 56.0 5.04e-01 100.0% 80.1%
3jy6D02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.63 56.0 5.19e-01 100.0% 79.3%
2j5vB01 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.62 56.0 4.37e-01 100.0% 89.6%
3qkwB01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.62 55.0 4.69e-01 100.0% 73.6%
1uanA00 3.40.50.10320 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LmbE-like 0.62 56.0 4.38e-01 100.0% 93.2%
3m9wA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.62 55.0 4.78e-01 100.0% 75.3%
4iilA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.61 56.0 5.09e-01 100.0% 77.4%
8db3B02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 54.0 4.35e-01 100.0% 55.8%
1mzhA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.60 43.0 3.38e-01 74.3% 76.4%
3ej3C00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.60 32.0 3.95e-01 78.1% 84.4%
2b34A00 3.40.50.850 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like 0.60 54.0 4.42e-01 100.0% 76.0%
2c2pA01 3.40.470.10 Alpha Beta › 3-Layer(aba) Sandwich › Uracil-DNA Glycosylase, subunit E › Uracil-DNA glycosylase-like domain 0.60 53.0 4.57e-01 100.0% 85.9%
1wcwA01 3.40.50.10090 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 53.0 5.01e-01 100.0% 80.8%
1dxhA01 3.40.50.1370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase 0.59 45.0 3.80e-01 81.0% 100.0%
3h8gA01 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.59 52.0 4.58e-01 99.0% 90.7%
2f46A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.59 43.0 3.96e-01 86.7% 57.0%
1cvrA02 3.40.50.1460 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 52.0 4.11e-01 100.0% 65.4%
3lkbA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.59 53.0 4.20e-01 100.0% 53.5%
3ej7H00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.59 32.0 4.13e-01 80.0% 100.0%
4pevA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.59 53.0 4.95e-01 100.0% 96.9%
2h0rA00 3.40.50.850 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like 0.59 50.0 4.07e-01 97.1% 99.5%
3loqA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.59 53.0 4.96e-01 99.0% 92.2%
5hn3A00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.59 52.0 3.72e-01 100.0% 80.7%
2f4nA01 3.40.50.10790 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › S-adenosyl-l-methionine hydroxide adenosyltransferase, N-terminal 0.58 51.0 4.62e-01 100.0% 85.1%
3ec1A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 51.0 4.44e-01 100.0% 89.9%
3mfqA02 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.58 45.0 4.16e-01 100.0% 64.4%
1b93B00 3.40.50.1380 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Methylglyoxal synthase-like domain 0.58 52.0 4.64e-01 100.0% 73.5%
2fm7A00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.58 31.0 3.80e-01 76.2% 85.5%
3pdiA01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.57 50.0 4.51e-01 100.0% 76.0%
3kegA00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.57 50.0 4.18e-01 100.0% 96.4%
1jmvA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.57 50.0 4.57e-01 99.0% 96.4%
3ik4A02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.57 42.0 3.20e-01 77.1% 66.8%
3abfA00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.57 31.0 3.75e-01 77.1% 84.4%
4rk4A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 50.0 4.60e-01 100.0% 83.1%
3p0rA00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.57 49.0 4.03e-01 100.0% 97.6%
1yacA00 3.40.50.850 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like 0.57 50.0 4.08e-01 100.0% 78.9%
3hu5A00 3.40.50.850 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like 0.56 49.0 4.12e-01 100.0% 96.3%
4cqbA02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.56 48.0 3.45e-01 93.3% 95.3%
1f06A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 51.0 4.34e-01 100.0% 67.3%
2ixdA00 3.40.50.10320 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LmbE-like 0.56 48.0 3.85e-01 100.0% 91.4%
2jl1A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 49.0 4.22e-01 100.0% 97.1%
3canA00 3.80.30.10 Alpha Beta › Alpha-Beta Horseshoe › pyruvate-formate lyase- activating enzyme › pyruvate-formate lyase- activating enzyme 0.55 42.0 3.66e-01 81.0% 96.3%
2hk0A00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.55 42.0 3.12e-01 82.9% 79.2%
1xhcA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 43.0 4.20e-01 84.8% 89.0%
1g0nB00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 47.0 3.67e-01 100.0% 84.6%
2ycdA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 37.0 4.03e-01 100.0% 88.4%
3bzcA03 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.54 47.0 4.47e-01 100.0% 97.7%
1tltA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 48.0 4.62e-01 100.0% 98.3%
3dghA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 42.0 4.02e-01 84.8% 87.8%
3c48A01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.53 46.0 3.71e-01 100.0% 74.0%
6iheA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 46.0 4.22e-01 99.0% 99.3%
1qrsA05 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.53 45.0 4.35e-01 99.0% 100.0%
2prsA02 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.53 46.0 4.48e-01 100.0% 89.5%
1xeaA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 47.0 4.53e-01 100.0% 99.2%
2egzC00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 41.0 3.20e-01 100.0% 39.9%
3gdwB00 3.40.50.510 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component 0.52 45.0 4.17e-01 100.0% 88.4%
3er6A00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.52 46.0 3.80e-01 100.0% 81.2%
2ejwA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 45.0 3.81e-01 100.0% 79.7%
1t7lB01 3.20.20.210 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.51 45.0 3.07e-01 97.1% 65.1%
1jhdA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.51 44.0 3.65e-01 100.0% 76.8%
1toaA02 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.51 45.0 4.19e-01 100.0% 87.8%
3r79A00 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.51 40.0 3.17e-01 85.7% 69.6%
3x2xA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.50 44.0 3.46e-01 97.1% 96.5%
2i6uA02 3.40.50.1370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase 0.50 44.0 3.87e-01 100.0% 88.2%
ECOD (93)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4944276 7565.1.1.0 a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like 0.94 90.0 6.72e-01 100.0% 47.6%
5060780 7565.1.1.1 a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like › Resolvase 0.92 88.0 7.63e-01 100.0% 76.0%
4599777 7565.1.1.1 a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like › Resolvase 0.92 88.0 7.92e-01 100.0% 77.0%
5009774 7565.1.1.1 a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like › Resolvase 0.92 84.0 7.25e-01 99.0% 66.7%
3589522 7565.1.1.1 a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like › Resolvase 0.90 75.0 6.62e-01 100.0% 62.8%
3962017 7565.1.1.1 a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like › Resolvase 0.90 85.0 7.53e-01 98.1% 81.4%
5064907 7565.1.1.1 a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like › Resolvase 0.89 78.0 6.97e-01 100.0% 68.6%
5011494 7565.1.1.1 a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like › Resolvase 0.89 84.0 6.40e-01 100.0% 48.4%
4932315 7565.1.1.1 a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like › Resolvase 0.88 84.0 7.32e-01 100.0% 71.3%
3978988 7565.1.1.0 a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like 0.88 76.0 6.15e-01 100.0% 52.2%
4990646 7565.1.1.1 a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like › Resolvase 0.88 84.0 7.39e-01 100.0% 75.2%
4376270 7565.1.1.1 a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like › Resolvase 0.88 82.0 6.37e-01 100.0% 49.5%
4969519 7565.1.1.1 a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like › Resolvase 0.88 81.0 7.52e-01 99.0% 80.8%
5081151 7565.1.1.1 a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like › Resolvase 0.88 81.0 7.11e-01 100.0% 70.3%
4928582 7565.1.1.1 a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like › Resolvase 0.87 83.0 7.51e-01 100.0% 77.8%
4940666 7565.1.1.1 a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like › Resolvase 0.87 68.0 7.50e-01 80.0% 98.8%
5079267 7565.1.1.1 a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like › Resolvase 0.87 82.0 7.55e-01 100.0% 93.1%
4988741 7565.1.1.1 a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like › Resolvase 0.86 81.0 7.18e-01 100.0% 72.4%
3590285 7565.1.1.1 a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like › Resolvase 0.86 74.0 6.58e-01 100.0% 67.1%
4998604 7565.1.1.1 a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like › Resolvase 0.86 82.0 7.31e-01 100.0% 76.4%
4952034 7565.1.1.1 a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like › Resolvase 0.85 76.0 6.85e-01 100.0% 71.4%
3282922 7565.1.1.0 a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like 0.84 68.0 7.02e-01 100.0% 89.0%
3954691 7565.1.1.1 a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like › Resolvase 0.83 78.0 7.08e-01 100.0% 78.5%
1031122 7565.1.1.1 a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like › Resolvase 0.82 78.0 6.87e-01 100.0% 76.4%
1411833 7565.1.1.1 a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like › Resolvase 0.82 76.0 7.24e-01 100.0% 90.8%
5018476 7565.1.1.1 a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like › Resolvase 0.81 73.0 6.68e-01 100.0% 75.6%
4257109 7565.1.1.1 a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like › Resolvase 0.80 74.0 6.52e-01 100.0% 73.3%
5038786 7565.1.1.1 a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like › Resolvase 0.79 75.0 7.37e-01 100.0% 97.3%
170205 7565.1.1.1 a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like › Resolvase 0.79 72.0 6.25e-01 100.0% 67.5%
4010034 7565.1.1.0 a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like 0.78 71.0 6.12e-01 100.0% 65.8%
4266448 7591.1.1.1 a/b three-layered sandwiches › Tetraacyldisaccharide 4'-kinase C-terminal domain › Tetraacyldisaccharide 4'-kinase C-terminal domain › Tetraacyldisaccharide 4'-kinase C-terminal domain › LpxK 0.77 60.0 5.79e-01 97.1% 73.9%
4947610 7566.1.1.4 a/b three-layered sandwiches › HflX family GTPase N-terminal domain › HflX family GTPase N-terminal domain › HflX family GTPase N-terminal domain › MMR_HSR1 0.73 65.0 5.38e-01 100.0% 55.1%
5079395 7565.1.1.0 a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like 0.73 64.0 6.62e-01 99.0% 99.0%
5071915 7566.1.1.2 a/b three-layered sandwiches › HflX family GTPase N-terminal domain › HflX family GTPase N-terminal domain › HflX family GTPase N-terminal domain › GTP-bdg_N 0.73 64.0 4.31e-01 98.1% 26.3%
3396418 7590.1.1.3 a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Piwi,ArgoMid 0.67 60.0 5.00e-01 100.0% 62.2%
5057089 7531.1.1.1 a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase 0.66 59.0 4.35e-01 100.0% 87.5%
3595118 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.66 58.0 4.03e-01 99.0% 98.9%
4990928 7531.1.1.1 a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase 0.65 58.0 4.49e-01 100.0% 96.7%
5026668 7531.1.1.1 a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase 0.65 58.0 4.39e-01 100.0% 96.5%
4420544 7531.1.1.1 a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase 0.64 57.0 4.25e-01 100.0% 87.9%
4148396 7531.1.1.1 a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase 0.64 57.0 4.32e-01 100.0% 93.2%
4665962 7531.1.1.0 a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like 0.64 57.0 4.31e-01 100.0% 94.6%
3190153 7579.1.1.0 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.64 56.0 4.15e-01 100.0% 95.2%
5065619 2007.1.3.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › B12-binding 0.63 56.0 4.45e-01 100.0% 71.6%
3696246 7531.1.1.1 a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase 0.63 56.0 4.11e-01 100.0% 88.8%
4498648 7531.1.1.1 a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase 0.63 56.0 4.26e-01 100.0% 95.0%
3989636 7567.1.1.1 a/b three-layered sandwiches › LmbE-like › LmbE-like › LmbE-like › PIG-L 0.63 57.0 4.57e-01 100.0% 93.2%
3190036 2007.1.5.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like 0.63 56.0 5.22e-01 100.0% 89.2%
5001907 2004.1.1.146 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.62 57.0 4.39e-01 100.0% 55.4%
10614 7567.1.1.1 a/b three-layered sandwiches › LmbE-like › LmbE-like › LmbE-like › PIG-L 0.62 56.0 4.38e-01 100.0% 93.2%
3958952 327.5.1.0 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins 0.61 35.0 3.60e-01 88.6% 58.0%
4988576 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.61 54.0 4.86e-01 100.0% 98.0%
5027695 2004.1.1.146 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.60 54.0 4.21e-01 100.0% 56.8%
3913735 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.60 54.0 4.54e-01 100.0% 63.9%
4988571 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.60 54.0 4.92e-01 100.0% 96.4%
3599009 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.60 53.0 4.10e-01 99.0% 83.7%
3401085 7561.1.1.1 a/b three-layered sandwiches › Isochorismatase-like hydrolases › Isochorismatase-like hydrolases › Isochorismatase-like hydrolases › Isochorismatase 0.60 52.0 4.06e-01 98.1% 92.9%
5021881 2003.1.1.123 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DUF166 0.60 53.0 4.41e-01 100.0% 73.7%
4064598 7543.1.1.2 a/b three-layered sandwiches › Methylglyoxal synthase-like › Methylglyoxal synthase-like › Methylglyoxal synthase-like › MGS 0.59 54.0 4.74e-01 100.0% 74.8%
4978056 2007.1.14.7 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › HGD-D 0.59 53.0 4.26e-01 100.0% 61.7%
5051259 2007.1.14.7 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › HGD-D 0.59 53.0 4.21e-01 100.0% 64.2%
4530682 7543.1.1.2 a/b three-layered sandwiches › Methylglyoxal synthase-like › Methylglyoxal synthase-like › Methylglyoxal synthase-like › MGS 0.59 53.0 4.98e-01 100.0% 85.4%
4970483 2003.1.1.123 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DUF166 0.59 52.0 4.82e-01 100.0% 92.6%
3712619 2004.1.1.211 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CLP1_P 0.58 52.0 4.05e-01 99.0% 80.4%
4962917 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.58 49.0 4.49e-01 94.3% 77.9%
4363238 2003.1.1.123 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DUF166 0.58 52.0 4.54e-01 100.0% 85.6%
4138507 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.58 41.0 4.29e-01 74.3% 81.6%
2163579 2002.1.1.161 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_97 0.58 48.0 3.55e-01 100.0% 34.8%
2722861 2011.2.1.5 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidase_A25 0.58 52.0 3.67e-01 99.0% 38.0%
2722862 2011.2.1.5 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidase_A25 0.58 52.0 3.91e-01 99.0% 48.4%
4038487 2007.1.8.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Uroporphyrinogen III synthase (U3S, HemD) › HEM4 0.58 51.0 4.87e-01 100.0% 85.6%
3284784 2007.1.8.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Uroporphyrinogen III synthase (U3S, HemD) › HEM4 0.58 51.0 4.76e-01 100.0% 83.7%
5077102 2007.1.14.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › ZnuA 0.57 50.0 4.68e-01 100.0% 79.2%
4967376 2007.1.8.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Uroporphyrinogen III synthase (U3S, HemD) › HEM4 0.57 51.0 4.66e-01 100.0% 82.6%
5062902 2005.1.1.22 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueH 0.57 50.0 4.17e-01 100.0% 65.1%
3777637 2007.9.1.1 a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › TIR 0.57 50.0 4.18e-01 100.0% 70.0%
5047016 2007.1.14.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like 0.57 50.0 4.61e-01 100.0% 76.3%
5008423 2007.1.8.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Uroporphyrinogen III synthase (U3S, HemD) › HEM4 0.57 51.0 4.82e-01 100.0% 85.6%
4584425 2007.1.8.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Uroporphyrinogen III synthase (U3S, HemD) › HEM4 0.57 50.0 4.86e-01 99.0% 88.3%
4970112 7561.1.1.1 a/b three-layered sandwiches › Isochorismatase-like hydrolases › Isochorismatase-like hydrolases › Isochorismatase-like hydrolases › Isochorismatase 0.56 49.0 4.20e-01 100.0% 84.9%
5037151 7543.1.1.2 a/b three-layered sandwiches › Methylglyoxal synthase-like › Methylglyoxal synthase-like › Methylglyoxal synthase-like › MGS 0.56 50.0 4.76e-01 100.0% 86.4%
4999365 7567.1.1.1 a/b three-layered sandwiches › LmbE-like › LmbE-like › LmbE-like › PIG-L 0.55 48.0 3.95e-01 100.0% 78.5%
4017226 2004.1.1.88 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › cobW 0.54 48.0 3.69e-01 100.0% 69.2%
4426919 2004.1.1.414 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 0.54 47.0 4.02e-01 100.0% 80.0%
5024115 2006.1.4.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.53 47.0 4.06e-01 100.0% 78.8%
3629834 2004.1.1.629 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom, Helicase_C, ResIII 0.53 47.0 3.07e-01 100.0% 34.1%
4991552 2007.1.14.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like 0.53 43.0 4.12e-01 100.0% 76.8%
3615886 2004.1.1.23 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.53 42.0 3.27e-01 89.5% 70.6%
4976129 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.52 44.0 3.46e-01 97.1% 72.2%
3503419 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 41.0 3.75e-01 89.5% 98.0%
4541289 2002.1.1.154 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Meth_synt_1 0.52 46.0 3.17e-01 100.0% 48.8%
5045121 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.52 46.0 3.62e-01 100.0% 82.2%
5022612 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.51 43.0 3.37e-01 98.1% 63.1%
D2 high residues 158-264
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07508.20 best Recombinase 71.7 7.20e-20 81.3% 96.1%
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4bqqB02 3.90.1750.20 Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 0.86 81.0 6.53e-01 100.0% 82.1%
6dnwA01 3.90.1750.20 Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 0.81 74.0 7.05e-01 100.0% 85.4%
1mkmB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 33.0 3.83e-01 92.5% 81.6%
3q23A08 1.20.140.110 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.56 39.0 3.51e-01 72.9% 94.8%
4q48A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 39.0 3.32e-01 100.0% 48.8%
2vkjA00 1.20.58.2030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 32.0 3.31e-01 95.3% 61.3%
3wirA02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.51 44.0 3.10e-01 99.1% 40.2%
1izmA00 1.20.120.740 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YgfB uncharacterised protein family PF03695 0.50 44.0 3.83e-01 98.1% 100.0%
1ka1A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.50 37.0 3.06e-01 80.4% 79.9%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4115814 101.1.1.40 alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.93 89.0 7.58e-01 100.0% 82.5%
3590291 101.1.1.40 alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.93 89.0 7.76e-01 100.0% 86.7%
4969809 101.1.1.40 alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.92 83.0 8.22e-01 95.3% 90.9%
3282557 101.1.1.40 alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.92 88.0 7.08e-01 100.0% 88.6%
4072866 101.1.1.40 alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.90 86.0 7.62e-01 100.0% 95.9%
4939690 101.1.1.40 alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.89 75.0 7.83e-01 100.0% 95.0%
5032641 101.1.1.40 alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.89 85.0 8.40e-01 100.0% 97.3%
3588264 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.88 69.0 7.56e-01 99.1% 96.7%
5030856 101.1.1.40 alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.88 83.0 7.80e-01 99.1% 88.8%
4932316 101.1.1.40 alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.88 76.0 7.84e-01 100.0% 96.0%
3962001 101.1.1.40 alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.88 83.0 7.46e-01 100.0% 86.4%
4007589 101.1.1.40 alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.88 82.0 7.72e-01 99.1% 93.6%
4944276 7565.1.1.0 a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like 0.87 67.0 5.09e-01 88.8% 37.8%
3987818 101.1.1.40 alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.87 82.0 7.97e-01 99.1% 98.3%
5038787 101.1.1.40 alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.86 78.0 7.81e-01 98.1% 93.6%
1062575 101.1.1.40 alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.86 81.0 6.52e-01 100.0% 81.7%
3956288 101.1.1.40 alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.86 81.0 7.37e-01 100.0% 85.9%
1145762 101.1.1.40 alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.81 74.0 6.93e-01 100.0% 80.8%
4998605 101.1.1.40 alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.78 71.0 7.04e-01 95.3% 93.6%
4942265 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 39.0 4.37e-01 80.4% 68.2%
3590551 101.1.2.244 alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.67 33.0 4.47e-01 91.6% 100.0%
3666975 376.1.1.20 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.61 39.0 4.28e-01 92.5% 80.0%
5022256 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 36.0 3.86e-01 93.5% 73.3%
3249848 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.56 34.0 3.78e-01 98.1% 76.5%
3525815 101.1.2.265 alpha arrays › HTH › HTH › winged helix domain › Stork_head 0.55 34.0 3.60e-01 94.4% 67.4%
3958076 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.54 40.0 2.88e-01 75.7% 58.9%
3963583 2008.1.1.67 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RecC_C 0.52 39.0 2.79e-01 77.6% 43.9%
3414582 109.4.1.1297 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TIMELESS, PF27570 0.51 42.0 2.69e-01 96.3% 17.2%
3480324 3930.2.1.1 alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in endoribonuclease Dicer › Helical bundle in endoribonuclease Dicer › Dicer_PBD 0.50 38.0 3.43e-01 93.5% 58.6%
D3 high residues 279-362_441-486
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13408.13 best Zn_ribbon_recom 62.5 5.30e-17 46.9% 100.0%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2h1eA02 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 26.0 4.02e-01 75.4% 92.7%
1dgsA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 31.0 3.96e-01 82.3% 98.6%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3442609 387.1.1.0 few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related 0.70 34.0 4.75e-01 89.2% 98.3%
3452215 387.1.1.0 few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related 0.68 33.0 4.66e-01 88.5% 100.0%
3432379 387.1.1.10 few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › zf-GRF 0.65 34.0 4.56e-01 76.2% 100.0%
4809699 3781.1.1.1 a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › Ribosomal protein L11/L12e N-terminal domain › Ribosomal protein L11/L12e N-terminal domain › Ribosomal_L11_N 0.56 26.0 3.39e-01 89.2% 80.0%
5005182 375.1.1.9 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-C4_Topoisom 0.55 36.0 4.32e-01 97.7% 96.7%
3907024 260.1.1.1 a+b duplicates or obligate multimers › beta-hairpin-alpha-hairpin repeat › beta-hairpin-alpha-hairpin repeat › beta-hairpin-alpha-hairpin repeat › Plectin 0.51 32.0 2.38e-01 80.0% 25.0%
D4 medium residues 385-440
PDB
Domain cluster: representative