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MG727698.1__AUS03534.1__PBL1C_66__00066

Bact-Vir

MG727698.1__AUS03534.1__PBL1C_66__00066

Identity

Accession:
MG727698 ↗
Kingdom:
phage

Quality

85.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Fernvirus› Paenibacillus_phage_PBL1c

TaxID: 2070194

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 20-112
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6vq6H01 1.10.287.3240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.59 52.0 3.95e-01 93.5% 46.1%
3f42A00 3.30.1310.10 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain 0.58 36.0 3.63e-01 83.9% 62.4%
1ybxA00 3.30.1310.10 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain 0.53 33.0 3.41e-01 82.8% 64.8%
1nyeA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.53 38.0 3.40e-01 77.4% 74.1%
2wp8A00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.51 39.0 2.89e-01 83.9% 88.1%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5042381 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.84 49.0 3.13e-01 100.0% 14.1%
3820988 220.1.1.11 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.64 45.0 4.02e-01 77.4% 51.1%
946 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 43.0 3.69e-01 72.0% 43.3%
4337520 245.2.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.63 42.0 4.12e-01 91.4% 64.0%
3962103 245.2.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.62 46.0 4.42e-01 94.6% 67.6%
4979556 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.62 36.0 2.74e-01 84.9% 24.8%
3702987 220.1.1.11 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.62 44.0 3.30e-01 75.3% 29.4%
3891023 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 52.0 4.12e-01 93.5% 71.7%
4976069 874.1.1.0 ↗ a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain 0.58 52.0 3.58e-01 94.6% 61.7%
3789025 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.58 38.0 3.45e-01 73.1% 46.7%
3996204 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 38.0 3.57e-01 71.0% 55.0%
3176453 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.56 38.0 3.39e-01 74.2% 47.1%
4139864 245.2.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.55 39.0 3.90e-01 88.2% 70.4%
3890313 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 38.0 3.21e-01 73.1% 57.6%
4498285 245.2.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.54 35.0 3.53e-01 87.1% 65.3%
4343474 245.2.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.53 35.0 3.48e-01 86.0% 65.3%
4325844 5085.1.1.2 ↗ a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › PF27489, PF29296 0.52 47.0 2.98e-01 100.0% 33.3%
3589881 245.2.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.50 34.0 3.46e-01 71.0% 72.6%