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MG747435.1__AVP39997.1__RsoM1USA_4__00004
Bact-VirMG747435.1__AVP39997.1__RsoM1USA_4__00004
Identity
- Accession:
- MG747435 ↗
- Kingdom:
- phage
Quality
81.2
mean pLDDT
Taxonomy
TaxID: 2991867
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 71-200
Domain cluster:
rep: NC_004683.1__NP_817713.1__Che9cp36__00036__D299-438
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF15648.13 best | Tox-REase-5 | 89.5 | 2.50e-25 | 70.8% | 100.0% |
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3r2uA02 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.67 | 32.0 | 3.91e-01 | 89.2% | 69.0% |
| 2k0zA00 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.66 | 35.0 | 3.74e-01 | 89.2% | 57.3% |
| 3gk5A00 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.65 | 33.0 | 3.72e-01 | 89.2% | 61.0% |
| 3gdwB00 | 3.40.50.510 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component | 0.60 | 42.0 | 4.16e-01 | 100.0% | 67.4% |
| 1oaaA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.60 | 54.0 | 4.32e-01 | 98.5% | 73.4% |
| 2bd0A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 53.0 | 4.33e-01 | 99.2% | 79.1% |
| 1xu9C00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 52.0 | 4.19e-01 | 99.2% | 69.8% |
| 1zemA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 52.0 | 4.18e-01 | 99.2% | 68.8% |
| 3mtqB00 | 3.40.50.510 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component | 0.58 | 40.0 | 3.99e-01 | 100.0% | 67.9% |
| 1a9yA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 52.0 | 4.42e-01 | 99.2% | 83.0% |
| 3o38B01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.57 | 52.0 | 4.25e-01 | 99.2% | 76.7% |
| 4bmvI00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.57 | 51.0 | 4.12e-01 | 99.2% | 70.5% |
| 3hrgA02 | 3.30.420.260 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain | 0.57 | 42.0 | 4.43e-01 | 86.9% | 86.8% |
| 1h5qA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.57 | 51.0 | 4.07e-01 | 98.5% | 72.3% |
| 1yt8A01 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.57 | 35.0 | 3.95e-01 | 81.5% | 81.4% |
| 3lf2A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 51.0 | 4.15e-01 | 100.0% | 73.8% |
| 4bg8A01 | 3.30.420.430 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.56 | 41.0 | 4.19e-01 | 100.0% | 77.5% |
| 1p0kA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.56 | 45.0 | 3.37e-01 | 84.6% | 45.4% |
| 4avnA00 | 3.20.20.40 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 1, 4-beta cellobiohydrolase | 0.55 | 48.0 | 3.38e-01 | 95.4% | 40.5% |
| 2cx6A00 | 3.30.370.10 | Alpha Beta › 2-Layer Sandwich › Barnase; Chain D › Barstar-like | 0.55 | 33.0 | 3.81e-01 | 78.5% | 85.4% |
| 1gz1A00 | 3.20.20.40 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 1, 4-beta cellobiohydrolase | 0.54 | 47.0 | 3.45e-01 | 95.4% | 60.2% |
| 2agkA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.54 | 43.0 | 3.56e-01 | 85.4% | 72.5% |
| 3icsA03 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.53 | 32.0 | 3.59e-01 | 80.8% | 75.5% |
| 2yqzA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 45.0 | 3.92e-01 | 90.8% | 95.9% |
| 2wlrA02 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.53 | 34.0 | 3.31e-01 | 88.5% | 56.6% |
| 2yhaA02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.53 | 40.0 | 3.33e-01 | 80.0% | 59.8% |
| 2ljaA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 34.0 | 3.30e-01 | 82.3% | 56.6% |
| 3g8rA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.52 | 43.0 | 3.44e-01 | 88.5% | 62.5% |
| 4mzyA02 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.52 | 41.0 | 3.74e-01 | 82.3% | 73.8% |
| 3fojA00 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.52 | 32.0 | 3.58e-01 | 81.5% | 79.8% |
| 1e5dA01 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.51 | 43.0 | 4.19e-01 | 99.2% | 81.8% |
| 4r9nA00 | 3.40.50.1360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 45.0 | 3.71e-01 | 100.0% | 76.5% |
| 2gnpA00 | 3.40.50.1360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.50 | 45.0 | 3.62e-01 | 100.0% | 73.7% |
| 4iscA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 45.0 | 4.29e-01 | 99.2% | 84.6% |
| 2h3gX01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.50 | 33.0 | 3.84e-01 | 100.0% | 100.0% |
| 3djcB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.50 | 33.0 | 3.83e-01 | 100.0% | 100.0% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3967787 | 2008.1.1.88 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Tox-REase-5 | 0.89 | 84.0 | 8.31e-01 | 98.5% | 97.0% |
| 5078940 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.66 | 59.0 | 5.62e-01 | 98.5% | 92.3% |
| 3839790 | 2008.1.1.95 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DpnII | 0.63 | 54.0 | 4.21e-01 | 90.8% | 87.0% |
| 4944351 | 2002.1.1.32 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Oxidored_FMN | 0.63 | 50.0 | 3.64e-01 | 84.6% | 60.6% |
| 5072639 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.61 | 52.0 | 4.87e-01 | 92.3% | 80.5% |
| 4948819 | 7573.1.1.1 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran | 0.61 | 39.0 | 4.42e-01 | 99.2% | 86.6% |
| 4928843 | 300.1.1.0 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease | 0.60 | 41.0 | 3.89e-01 | 96.2% | 58.7% |
| 1149280 | 2007.2.5.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase › Rhodanese | 0.59 | 34.0 | 3.99e-01 | 100.0% | 83.7% |
| 3427403 | 2008.1.1.151 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF28664 | 0.59 | 53.0 | 4.87e-01 | 98.5% | 80.6% |
| 5080733 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.58 | 45.0 | 4.59e-01 | 80.8% | 82.3% |
| 3631160 | 2003.1.1.142 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › KR, adh_short_C2 | 0.58 | 52.0 | 4.05e-01 | 98.5% | 75.4% |
| 3732502 | 2003.1.1.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short | 0.58 | 52.0 | 4.09e-01 | 99.2% | 79.3% |
| 3189601 | 2003.1.1.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short | 0.57 | 51.0 | 4.12e-01 | 100.0% | 80.8% |
| 5070596 | 7566.1.1.2 ↗ | a/b three-layered sandwiches › HflX family GTPase N-terminal domain › HflX family GTPase N-terminal domain › HflX family GTPase N-terminal domain › GTP-bdg_N | 0.57 | 41.0 | 3.66e-01 | 99.2% | 53.0% |
| 3918235 | 2003.1.1.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short | 0.56 | 49.0 | 3.74e-01 | 98.5% | 67.7% |
| 3731276 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.55 | 46.0 | 4.34e-01 | 98.5% | 73.5% |
| 4491496 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.54 | 48.0 | 3.56e-01 | 99.2% | 61.2% |
| 5064462 | 2007.2.5.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase › Rhodanese | 0.53 | 34.0 | 3.42e-01 | 84.6% | 62.2% |
| 5038021 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.53 | 48.0 | 3.97e-01 | 98.5% | 89.0% |
| 4114769 | 2007.3.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains › Ligase_CoA | 0.53 | 46.0 | 4.26e-01 | 96.2% | 86.9% |
| 3957164 | 2007.3.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains | 0.53 | 46.0 | 4.29e-01 | 96.9% | 86.1% |
| 5044534 | 7512.1.1.3 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 | 0.53 | 48.0 | 4.14e-01 | 100.0% | 73.0% |
| 3179073 | 2002.4.1.1 ↗ | a/b barrels › TIM beta/alpha-barrel › Nicotinate/Quinolinate PRTase C-terminal domain-like › Nicotinate/Quinolinate PRTase C-terminal domain-like › NAPRTase | 0.52 | 41.0 | 3.14e-01 | 82.3% | 43.8% |
| 3591357 | 2003.1.1.82 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Slo-like_RCK | 0.52 | 47.0 | 4.11e-01 | 100.0% | 93.8% |
| 5035283 | 2484.1.1.38 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 | 0.52 | 38.0 | 3.95e-01 | 100.0% | 80.0% |
| 3936276 | 207.1.1.156 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PF27094 | 0.52 | 46.0 | 3.79e-01 | 95.4% | 74.2% |
| 2700287 | 2007.2.5.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase | 0.52 | 34.0 | 3.72e-01 | 80.8% | 82.5% |
| 3611053 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.52 | 46.0 | 3.85e-01 | 100.0% | 77.4% |
| 4028846 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.51 | 40.0 | 4.10e-01 | 96.9% | 83.7% |
| 4281320 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.50 | 42.0 | 3.26e-01 | 93.1% | 72.8% |
| 4003239 | 2006.1.6.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA | 0.50 | 45.0 | 3.90e-01 | 99.2% | 87.8% |
| 4172936 | 2002.4.1.1 ↗ | a/b barrels › TIM beta/alpha-barrel › Nicotinate/Quinolinate PRTase C-terminal domain-like › Nicotinate/Quinolinate PRTase C-terminal domain-like › NAPRTase | 0.50 | 39.0 | 3.04e-01 | 82.3% | 42.1% |