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MG752970.1__AVH84936.1__RsoM2USA_7__00007

Bact-Vir

MG752970.1__AVH84936.1__RsoM2USA_7__00007

Identity

Accession:
MG752970 ↗
Kingdom:
phage

Quality

93.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Ralstonia_phage_RsoM2USA

TaxID: 2070027

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-100
PDB
Domain cluster: rep: gwa1_scaffold_31_prodigal-single.1__X__X__00034__D7-87
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF22945.3 best LEM-3_GIY-YIG 27.8 3.30e-06 96.9% 47.0%
PF01541.31 GIY-YIG 34.9 2.20e-08 91.7% 88.5%
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.81 72.0 7.38e-01 100.0% 98.9%
4er8A00 3.30.70.1290 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transposase IS200-like 0.60 54.0 4.50e-01 100.0% 75.8%
2abqA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.54 40.0 2.83e-01 79.2% 30.2%
3r5dA01 3.30.70.2010 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 43.0 3.98e-01 89.6% 89.1%
1lcsA00 3.90.310.10 Alpha Beta › Alpha-Beta Complex › Viral Glycoprotein Gp70 › ENV polyprotein, receptor-binding domain 0.52 38.0 2.99e-01 77.1% 97.6%
1ifqB00 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.52 38.0 3.51e-01 79.2% 97.7%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.51 37.0 3.90e-01 77.1% 100.0%
2rp4A00 6.10.280.60 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain 0.50 31.0 3.53e-01 99.0% 83.1%
5yrpA00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.50 41.0 3.17e-01 89.6% 97.8%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3622050 821.1.1.7 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › LEM-3_GIY-YIG 0.84 80.0 6.11e-01 100.0% 56.9%
3404363 821.1.1.7 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › LEM-3_GIY-YIG 0.84 80.0 6.27e-01 100.0% 66.5%
3963488 821.1.1.7 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › LEM-3_GIY-YIG 0.83 79.0 7.38e-01 100.0% 83.5%
3872081 821.1.1.7 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › LEM-3_GIY-YIG 0.83 78.0 5.89e-01 100.0% 55.5%
3215217 821.1.1.7 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › LEM-3_GIY-YIG 0.83 77.0 6.32e-01 100.0% 65.5%
3212287 821.1.1.7 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › LEM-3_GIY-YIG 0.82 77.0 6.51e-01 100.0% 70.7%
3505268 821.1.1.0 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.79 74.0 6.53e-01 100.0% 85.9%
4878203 7581.1.1.16 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › FAE1_CUT1_RppA 0.57 46.0 3.47e-01 86.5% 52.9%
3611980 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.55 37.0 3.35e-01 70.8% 49.3%
5000700 304.57.1.1 ↗ a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › RNase_P_Rpp14 0.54 47.0 4.48e-01 92.7% 97.3%
4028321 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 39.0 3.21e-01 78.1% 68.6%
3713158 304.60.1.2 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like › Ribosomal_L10 0.52 37.0 2.88e-01 74.0% 52.3%