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MG752970.1__AVH84944.1__RsoM2USA_15__00015

Bact-Vir

MG752970.1__AVH84944.1__RsoM2USA_15__00015

Identity

Accession:
MG752970 ↗
Kingdom:
phage

Quality

72.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Ralstonia_phage_RsoM2USA

TaxID: 2070027

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-105
PDB
Domain cluster: rep: MH533020.1__AXN57917.1__X__00186__D2-86
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3wknF00 6.20.50.120 Special › Other non-globular › N-terminal domain of TfIIb › 0.70 32.0 4.44e-01 77.5% 93.5%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.59 24.0 3.10e-01 77.5% 61.4%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 29.0 3.37e-01 82.4% 63.0%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.59 31.0 3.99e-01 83.3% 98.0%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.58 31.0 3.88e-01 82.4% 94.4%
1s68A02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.58 49.0 4.76e-01 91.2% 98.2%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 28.0 3.82e-01 77.5% 100.0%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 30.0 3.85e-01 80.4% 98.0%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 29.0 3.65e-01 79.4% 85.7%
1yw5A01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.55 31.0 3.64e-01 88.2% 85.7%
2obdA01 3.15.20.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 2 › Bactericidal permeability-increasing protein; domain 2 0.55 48.0 3.57e-01 100.0% 55.8%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.54 28.0 3.54e-01 77.5% 92.3%
2uvaG09 2.40.128.700 Mainly Beta › Beta Barrel › Lipocalin › 0.53 46.0 4.47e-01 97.1% 85.3%
2l6mA00 3.30.160.400 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 31.0 3.16e-01 79.4% 58.4%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 31.0 3.45e-01 98.0% 74.1%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 31.0 3.77e-01 94.1% 100.0%
1lgpA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.52 26.0 2.50e-01 76.5% 42.5%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 33.0 3.76e-01 100.0% 91.7%
3uezC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 31.0 3.38e-01 76.5% 73.5%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 29.0 3.62e-01 82.4% 98.3%
1n27A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 28.0 2.93e-01 98.0% 56.2%
1cf9A01 2.40.180.10 Mainly Beta › Beta Barrel › Catalase HpII, Chain A, domain 1 › Catalase core domain 0.51 45.0 3.08e-01 100.0% 51.6%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3870002 883.1.1.15 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP+LBP_BPI_CETP_C 0.65 58.0 3.85e-01 100.0% 35.4%
3612090 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 34.0 4.19e-01 80.4% 90.0%
3261395 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 30.0 3.68e-01 81.4% 77.6%
4027026 11.1.1.851 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26192 0.59 38.0 3.30e-01 80.4% 42.5%
1734926 5084.5.1.4 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprD 0.58 37.0 4.16e-01 70.6% 88.0%
3773175 883.1.1.1 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.57 48.0 3.99e-01 99.0% 51.4%
3899501 223.1.1.98 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PF30670 0.57 33.0 2.88e-01 81.4% 36.8%
3569021 883.1.1.1 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.57 48.0 3.95e-01 100.0% 50.8%
3203449 3195.1.1.1 ↗ extended segments › Mediator of RNA polymerase II transcription subunit 6 › Mediator of RNA polymerase II transcription subunit 6 › Mediator of RNA polymerase II transcription subunit 6 › Med6 0.55 41.0 3.30e-01 81.4% 42.2%
5047657 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 25.0 3.23e-01 78.4% 76.4%
3599646 245.1.1.0 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.54 40.0 4.20e-01 100.0% 88.9%
4302614 3124.1.1.1 ↗ beta sandwiches › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › NAC 0.52 31.0 3.30e-01 91.2% 67.4%
3784766 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 37.0 2.51e-01 74.5% 41.8%
3406827 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 43.0 3.69e-01 93.1% 78.2%
5050109 375.1.1.31 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.51 27.0 2.88e-01 82.4% 56.5%
3448591 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.50 23.0 3.05e-01 93.1% 84.0%
5012312 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 30.0 2.65e-01 98.0% 36.9%