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MG752970.1__AVH85091.1__RsoM2USA_163__00163

Bact-Vir

MG752970.1__AVH85091.1__RsoM2USA_163__00163

Identity

Accession:
MG752970 ↗
Kingdom:
phage

Quality

87.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-67
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zldA00 2.60.40.1920 Mainly Beta › Sandwich › Immunoglobulin-like › Proteinaceous host-selective toxin ToxA 0.61 47.0 4.03e-01 86.4% 52.9%
6wubf01 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.60 47.0 4.26e-01 89.4% 100.0%
3kysA00 2.70.50.80 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › 0.59 42.0 2.97e-01 74.2% 64.4%
4aw7A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.59 37.0 3.11e-01 90.9% 34.7%
3winE03 2.60.120.1090 Mainly Beta › Sandwich › Jelly Rolls › 0.59 42.0 3.63e-01 90.9% 46.4%
4xurA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.59 48.0 3.55e-01 87.9% 45.3%
2v50D07 3.30.70.1440 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.58 46.0 4.18e-01 89.4% 92.6%
1m0wA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.58 47.0 4.01e-01 98.5% 53.7%
4ncdA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 50.0 4.15e-01 97.0% 66.1%
4gucA00 2.60.40.3720 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 46.0 3.84e-01 89.4% 54.8%
1t4aA00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.56 45.0 4.32e-01 90.9% 100.0%
2cyyA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.56 46.0 4.15e-01 93.9% 80.0%
2dnmA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.56 45.0 3.97e-01 92.4% 82.5%
2hgsA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.56 45.0 3.90e-01 98.5% 55.9%
7y8sA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 43.0 3.90e-01 98.5% 60.0%
1va9A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 43.0 3.56e-01 98.5% 46.7%
1lr5B00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 35.0 2.77e-01 92.4% 27.0%
2cqpA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.55 44.0 3.94e-01 92.4% 84.7%
1lb6A00 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.55 38.0 2.97e-01 74.2% 88.4%
3e1uA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.54 45.0 3.41e-01 100.0% 66.8%
1xe0C00 2.60.120.340 Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain 0.54 43.0 3.83e-01 90.9% 76.2%
8afoA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 39.0 3.59e-01 98.5% 58.0%
4mt1A07 3.30.70.1440 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.54 44.0 3.87e-01 93.9% 91.2%
4hscX04 2.60.40.1430 Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 0.54 36.0 3.12e-01 71.2% 69.1%
1whwA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 44.0 4.00e-01 95.5% 88.3%
4pkdB02 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 45.0 3.89e-01 100.0% 77.0%
3s8sA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 43.0 3.78e-01 93.9% 76.6%
1x9tA02 3.90.1620.10 Alpha Beta › Alpha-Beta Complex › adenovirus 2 penton base, domain 2 › adenovirus 2 penton base, domain 2 0.53 43.0 2.97e-01 98.5% 76.1%
4iyqA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 41.0 3.68e-01 92.4% 82.2%
3uwtA02 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 44.0 4.04e-01 95.5% 95.5%
4g7xB00 3.30.1150.10 Alpha Beta › 2-Layer Sandwich › Fusion Protein Consisting Of Minor Coat Protein, Glycine Rich Linker, Tola, And A His Tag; Chain: A; Domain 2 › 0.52 42.0 3.62e-01 87.9% 65.7%
1p1lA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 40.0 3.64e-01 92.4% 85.3%
1j2vA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 40.0 3.61e-01 90.9% 85.1%
3ahpA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 40.0 3.57e-01 92.4% 83.0%
5kfzA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.51 42.0 3.48e-01 92.4% 54.5%
2nuhA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 39.0 3.58e-01 92.4% 85.6%
2z5bB01 3.30.230.90 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.51 35.0 2.95e-01 71.2% 88.2%
6gdxA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 41.0 3.56e-01 92.4% 79.4%
1tvgA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 38.0 3.20e-01 93.9% 42.6%
4dohB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 38.0 3.54e-01 100.0% 63.6%
4h3wA02 2.60.120.1260 Mainly Beta › Sandwich › Jelly Rolls › 0.50 42.0 3.21e-01 92.4% 67.8%
3v4mB00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.50 42.0 3.75e-01 100.0% 96.2%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3249011 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.64 58.0 4.43e-01 100.0% 45.7%
3254120 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.64 57.0 4.26e-01 100.0% 41.3%
4370124 284.1.1.0 a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.62 51.0 3.91e-01 90.9% 48.4%
3408263 11.1.1.822 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF229 0.62 46.0 4.13e-01 98.5% 55.8%
4032409 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 51.0 4.87e-01 89.4% 85.3%
3929121 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 42.0 3.52e-01 90.9% 41.7%
3895559 10.2.1.5 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide 0.61 52.0 3.48e-01 92.4% 28.3%
5083843 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 46.0 4.08e-01 89.4% 56.8%
3705968 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.61 54.0 4.20e-01 100.0% 64.1%
1002433 11.10.1.3 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › Toxin_ToxA 0.60 46.0 3.96e-01 86.4% 52.4%
3413788 11.2.1.8 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PTEN_C2 0.60 49.0 3.84e-01 92.4% 42.1%
3269973 304.5.1.0 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.60 47.0 4.24e-01 89.4% 100.0%
3712873 284.1.1.0 a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.59 47.0 3.94e-01 90.9% 74.4%
3539303 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.59 50.0 3.51e-01 92.4% 31.5%
3170806 11.1.1.9 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N 0.58 50.0 3.81e-01 100.0% 67.3%
3689024 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.57 45.0 3.68e-01 100.0% 44.6%
5033281 304.100.1.1 a+b two layers › Alpha-beta plaits › PurS-like › PurS-like › PurS 0.57 46.0 4.67e-01 90.9% 93.8%
3594267 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 46.0 3.83e-01 87.9% 57.4%
3969660 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 49.0 3.88e-01 98.5% 70.6%
4608687 11.1.1.416 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › SPC22 0.56 50.0 3.64e-01 98.5% 42.2%
3243866 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.56 47.0 4.21e-01 100.0% 71.0%
3537286 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.56 48.0 4.16e-01 98.5% 61.9%
3786610 11.1.1.41 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.56 49.0 3.73e-01 100.0% 58.1%
3818855 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.56 49.0 3.63e-01 100.0% 43.4%
3247492 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 38.0 3.58e-01 92.4% 56.5%
3410193 11.1.1.536 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1091 0.56 46.0 3.66e-01 98.5% 65.2%
3937926 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 38.0 3.64e-01 100.0% 60.0%
5082586 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 48.0 4.01e-01 98.5% 58.3%
3593291 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 44.0 3.43e-01 87.9% 62.1%
2755624 304.44.1.1 a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 0.55 48.0 3.69e-01 100.0% 67.7%
4025700 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.54 46.0 4.00e-01 100.0% 90.9%
3894112 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.54 44.0 3.43e-01 93.9% 56.2%
3382614 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 44.0 2.62e-01 90.9% 13.9%
3884631 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 44.0 3.85e-01 100.0% 58.1%
3736222 206.1.3.14 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › GSH_synth_ATP 0.54 45.0 2.85e-01 98.5% 62.7%
4677137 219.1.1.50 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH_1 0.54 45.0 2.73e-01 100.0% 25.1%
5050551 876.1.1.0 a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin 0.54 43.0 3.39e-01 89.4% 96.7%
4937786 304.5.1.3 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.54 43.0 3.85e-01 90.9% 84.0%
3405278 382.1.1.3 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Activin_recp 0.54 44.0 3.93e-01 100.0% 63.0%
4321101 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.53 45.0 3.87e-01 100.0% 79.1%
3923241 10.4.1.1 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.53 44.0 3.40e-01 92.4% 59.3%
3478357 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 45.0 3.67e-01 100.0% 65.9%
3797443 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 45.0 3.49e-01 100.0% 66.5%
3788475 11.1.1.626 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Bul1_N 0.52 44.0 3.15e-01 100.0% 63.1%
3702886 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.52 43.0 3.04e-01 100.0% 37.6%
5038160 304.5.1.3 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.52 41.0 3.72e-01 92.4% 88.0%
5078601 304.5.1.3 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.52 42.0 3.63e-01 90.9% 82.4%
4928840 304.5.1.3 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.52 41.0 3.69e-01 92.4% 87.0%
4803119 304.5.1.3 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.52 41.0 3.64e-01 90.9% 79.8%
4940122 304.5.1.3 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.52 40.0 3.66e-01 92.4% 88.9%
4932235 304.5.1.3 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.52 40.0 3.60e-01 92.4% 84.6%
4967222 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.52 38.0 3.96e-01 84.8% 88.3%
5027749 304.5.1.3 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.51 40.0 3.63e-01 92.4% 89.0%
3410590 10.2.1.5 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide 0.51 44.0 3.21e-01 100.0% 42.1%
3326561 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 46.0 3.82e-01 100.0% 86.8%
3236317 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 42.0 3.64e-01 97.0% 58.1%
4084879 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.51 38.0 3.59e-01 87.9% 64.7%
4373360 11.1.1.9 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N 0.51 43.0 3.37e-01 100.0% 63.2%
3647278 3662.1.1.3 a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › PAC4 0.51 36.0 3.12e-01 78.8% 45.2%
3178419 11.1.1.378 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Rgp1 0.50 43.0 3.31e-01 98.5% 51.9%
3732370 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.50 40.0 4.23e-01 92.4% 98.3%
3737793 11.1.1.41 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.50 41.0 3.19e-01 100.0% 63.3%
3882154 11.1.1.99 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.50 43.0 3.24e-01 100.0% 45.7%
3993711 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 43.0 3.78e-01 100.0% 67.6%
2106284 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.50 40.0 4.05e-01 93.9% 94.0%
D2 medium residues 68-125
PDB
Domain cluster: representative