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MG752970.1__AVH85224.1__RsoM2USA_296__00296

Bact-Vir

MG752970.1__AVH85224.1__RsoM2USA_296__00296

Identity

Accession:
MG752970 ↗
Kingdom:
phage

Quality

90.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Ralstonia_phage_RsoM2USA

TaxID: 2070027

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-114
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3tu3B03 1.20.1050.100 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.63 43.0 3.74e-01 87.0% 44.7%
3nowA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.63 57.0 3.95e-01 100.0% 33.5%
2x19B00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.62 55.0 3.24e-01 100.0% 15.0%
1v9vA01 1.20.1480.20 Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › MAST3 pre-PK domain-like 0.61 36.0 3.88e-01 83.3% 66.3%
2e9xD01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 45.0 4.17e-01 78.7% 71.5%
4epzA00 1.25.40.810 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › UpxZ 0.60 39.0 3.51e-01 94.4% 45.5%
1za0A00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.60 53.0 4.17e-01 100.0% 68.6%
1e8yA03 1.25.40.70 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Phosphatidylinositol 3-kinase, accessory domain (PIK) 0.59 47.0 3.91e-01 100.0% 48.9%
5tprA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.58 42.0 3.40e-01 75.9% 56.0%
3gs3A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.58 52.0 4.03e-01 100.0% 53.4%
5hyhA00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.57 50.0 3.79e-01 100.0% 76.0%
3zheC01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 48.0 4.13e-01 100.0% 56.5%
4c0eA02 1.25.40.800 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.57 50.0 3.97e-01 98.1% 51.6%
4hteA01 1.20.58.1730 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 43.0 3.97e-01 82.4% 84.6%
3anwA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 42.0 4.21e-01 79.6% 84.1%
7tvyA01 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.56 32.0 3.15e-01 92.6% 51.7%
2rkkA01 1.25.40.270 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Vacuolar protein sorting-associated protein vta1 0.55 46.0 4.07e-01 90.7% 75.6%
1jkvA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.55 40.0 3.37e-01 76.9% 61.4%
3axjB01 1.20.58.190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 0.55 48.0 4.29e-01 98.1% 80.6%
3uumA00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 43.0 4.21e-01 86.1% 76.2%
5jnmA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.54 48.0 4.16e-01 100.0% 98.3%
2if4A02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 44.0 4.16e-01 100.0% 72.2%
5hdiA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.54 42.0 2.90e-01 85.2% 70.0%
3c5wA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.54 44.0 3.48e-01 98.1% 42.5%
1gw5A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.53 48.0 3.02e-01 100.0% 21.2%
3sl9B00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.53 46.0 4.01e-01 100.0% 61.8%
3rvyA01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.53 41.0 4.04e-01 83.3% 92.1%
1t98A02 1.20.58.590 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chromosome partition protein MukF, middle domain 0.52 45.0 4.00e-01 99.1% 91.4%
4id0A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.52 41.0 4.06e-01 88.0% 82.1%
6whbA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.52 45.0 3.45e-01 100.0% 41.9%
3aqbA00 1.20.120.1450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.52 41.0 3.88e-01 87.0% 87.4%
2wzkA01 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.52 42.0 3.99e-01 88.0% 81.1%
7lb8B01 1.10.3470.10 Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC 0.51 44.0 3.25e-01 97.2% 49.2%
3hz3A03 3.20.20.470 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glucansucrase 0.51 40.0 2.85e-01 85.2% 69.1%
3qhbA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.51 39.0 3.35e-01 88.9% 49.2%
1sz9C00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.51 40.0 3.78e-01 100.0% 67.9%
3cf6E03 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.51 44.0 4.21e-01 99.1% 94.7%
1elkA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.51 42.0 3.75e-01 100.0% 63.4%
3r9bA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.51 37.0 2.65e-01 79.6% 51.9%
4gltA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.51 40.0 3.94e-01 87.0% 81.6%
3vwaA03 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.50 42.0 3.16e-01 100.0% 34.2%
3l6aA01 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.50 43.0 3.66e-01 98.1% 57.9%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4023064 109.4.1.908 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_DOP1 0.67 61.0 4.86e-01 99.1% 73.8%
3412629 109.4.1.839 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Maestro_HEAT 0.63 57.0 4.44e-01 100.0% 52.3%
3679487 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 56.0 4.34e-01 100.0% 52.4%
3719828 109.4.1.1127 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_Cnot1 0.63 54.0 4.39e-01 95.4% 69.0%
3586781 109.4.1.2234 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_Maestro, HEAT_Maestro_2, HEAT_MROH2B_1st 0.63 56.0 3.23e-01 99.1% 10.3%
4387541 5050.1.1.23 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › CLN3 0.60 43.0 3.44e-01 74.1% 63.4%
4012901 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 53.0 3.22e-01 100.0% 17.1%
3938479 109.4.1.460 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › UTP20_C 0.60 51.0 2.86e-01 99.1% 7.4%
3900062 109.4.1.114 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Xpo1,Exportin-T 0.60 52.0 3.08e-01 99.1% 12.4%
3623631 109.4.1.464 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Exportin-T 0.60 52.0 3.72e-01 99.1% 49.6%
4303083 109.4.1.114 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Xpo1,Exportin-T 0.60 52.0 3.41e-01 100.0% 36.5%
3788122 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.59 49.0 3.23e-01 94.4% 59.7%
3940901 109.4.1.911 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COG6_C 0.58 51.0 3.35e-01 100.0% 35.6%
3421701 109.4.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm 0.58 51.0 3.07e-01 98.1% 15.0%
4953775 4163.1.1.0 ↗ alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like 0.58 43.0 4.10e-01 78.7% 83.1%
3707199 109.6.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF,RasGEF_N 0.58 50.0 3.18e-01 99.1% 17.9%
3373701 109.4.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm 0.58 50.0 3.33e-01 98.1% 25.8%
3760050 109.4.1.71 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IFRD_C,IFRD 0.57 50.0 3.41e-01 98.1% 28.4%
3705130 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 36.0 3.02e-01 99.1% 33.2%
3254391 109.4.1.508 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › KBP_C 0.57 53.0 4.06e-01 100.0% 46.4%
3595403 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 51.0 3.34e-01 100.0% 29.8%
3904300 109.4.1.506 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nop14 0.57 52.0 4.25e-01 100.0% 78.5%
3685886 109.4.1.167 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Rif1_N 0.57 47.0 3.03e-01 90.7% 45.1%
4301876 109.6.1.3 ↗ alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF_N 0.57 51.0 4.10e-01 100.0% 75.3%
3266606 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 47.0 3.67e-01 92.6% 59.2%
3260931 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.56 46.0 3.24e-01 99.1% 26.5%
5075578 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 50.0 3.70e-01 100.0% 39.3%
3793179 109.4.1.114 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Xpo1,Exportin-T 0.56 49.0 3.08e-01 100.0% 26.5%
3692700 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 49.0 3.38e-01 99.1% 34.6%
3727131 109.4.1.111 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PUL 0.56 50.0 3.66e-01 100.0% 43.3%
4610519 603.1.1.211 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF31236 0.56 47.0 3.79e-01 93.5% 64.5%
3194850 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 51.0 4.65e-01 100.0% 84.3%
3892024 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 48.0 4.45e-01 95.4% 88.1%
3271711 109.6.1.3 ↗ alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF_N 0.54 48.0 4.46e-01 100.0% 92.9%
4488279 109.4.1.295 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COP9_hel_rpt 0.54 44.0 3.08e-01 100.0% 27.2%
3742245 109.4.1.1276 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FAT, HEAT_ATR 0.54 48.0 3.84e-01 99.1% 56.8%
3815681 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 45.0 3.93e-01 92.6% 65.9%
3263383 109.6.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF,RasGEF_N 0.53 47.0 3.21e-01 99.1% 32.8%
4024457 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 47.0 3.61e-01 100.0% 53.8%
3629965 109.6.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF 0.53 46.0 3.08e-01 100.0% 23.1%
3276504 109.6.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF,RasGEF_N 0.53 47.0 3.21e-01 98.1% 29.4%
3199780 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.53 38.0 3.15e-01 74.1% 91.2%
3784855 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 47.0 3.67e-01 99.1% 67.2%
3272128 109.6.1.3 ↗ alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF_N 0.53 46.0 4.17e-01 98.1% 76.7%
3251314 109.4.1.1206 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › F-box-like 0.52 45.0 3.58e-01 98.1% 46.8%
3256848 109.6.1.3 ↗ alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF_N 0.52 46.0 4.00e-01 98.1% 65.5%
3525698 174.1.1.43 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › CD20 0.51 39.0 3.69e-01 87.0% 65.2%
3598215 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.51 45.0 3.93e-01 100.0% 85.3%
3178762 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.51 45.0 3.69e-01 99.1% 73.7%
3268031 109.6.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF,RasGEF_N 0.51 44.0 3.00e-01 99.1% 28.1%
5057188 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.50 39.0 3.01e-01 86.1% 54.4%